Hi Wei,
If you have an interpretable density, the efficientest way in my
opinion, is to construct manually (only 6bp).
You can use coot and the button "add residue". Coot can add nucleotide
directly at the extremity of your existing nucleic acid model.
Hope to help you.
Nicolas
Le 18/03/1
Hi all,
I am refining a structure of protein-DNA complex with coot. The DNA in
my search model is shorter than the DNA in the crystal, and now I
could see the density for extra DNA(6 base pairs) on either end of the
search model DNA. But, I don't know how to build the extra DNA back to
fit the dens
