There are 6 messages totaling 891 lines in this issue.
Topics of the day:
1. Postdoctoral position in ABC transporter-mediated
polysaccharide secretion
2. refinement papers (3)
3. I used up all CCP4 projects ... seemingly ... (2)
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Date: Mon, 25 Jun 2018 00:15:04 +0000
From: "Zimmer, Jochen (jz3x)" <j...@virginia.edu>
Subject: Postdoctoral position in ABC transporter-mediated
polysaccharide secretion
Dear Colleagues,
I would like to draw your attention to an open postdoctoral position
in our group. We are interested in how cells synthesize and secrete
surface polysaccharides to form cell walls and extracellular
matrices. Specifically, the successful candidate will join our
efforts to structurally and functionally characterize ABC
transporter-mediated polysaccharide secretion. The project involves
crystallographic and cryo electron microscopy techniques combined
with in vitro reconstitutions of transport processes.
The University of Virginia provides an excellent environment for
interdisciplinary research in microbiology, infectious diseases, and
membrane biophysics. UVA maintains state-of-the-art infrastructures
for structural biology, including NMR and EPR spectroscopy, electron
microscopy, X-ray crystallography, and super-resolution microscopy.
Interested candidates are encourage to contact me directly
(jochen_zim...@virginia.edu).
Sincerely,
Jochen Zimmer
*******************************
Jochen Zimmer, D. Phil.
Associate Professor
University of Virginia
Molecular Physiology & Biol. Physics
480 Ray C. Hunt Dr.
Snyder Bldg. #380
Charlottesville, VA 22908, USA
Phone: 434 243 6506
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Date: Mon, 25 Jun 2018 12:21:27 +0000
From: Careina Edgooms <careinaedgo...@yahoo.com>
Subject: refinement papers
Hello everyone
I am giving talk about refinement and model building. I wonder if
anyone knows of latest relevant papers on this topic that you could
suggest for me?thank you
Careina
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Date: Mon, 25 Jun 2018 16:57:35 +0200
From: Misba Ahmad <misba.ah...@gmail.com>
Subject: Re: refinement papers
Here are some nice papers:
journals.iucr.org/d/issues/2012/04/00/
Best
Misbha
On Mon, 25 Jun 2018 at 14:26, Careina Edgooms <
000002531c126adf-dmarc-requ...@jiscmail.ac.uk> wrote:
Hello everyone
I am giving talk about refinement and model building. I wonder if anyone
knows of latest relevant papers on this topic that you could suggest for me?
thank you
Careina
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Date: Mon, 25 Jun 2018 17:25:54 +0000
From: Antonio Ariza <antonio.ar...@path.ox.ac.uk>
Subject: I used up all CCP4 projects ... seemingly ...
Hi all and sorry ... (I thought it best to apologise pre-emptively
for this rather long question).
Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG
time ago, but a student in my lab had trouble transferring his
projects from CCP4i to CCP4i2, so I decided to postpone it ... and I
kept postponing it ever since. I have now run into a problem with
the old CCP4i gui, which means I might have to change over to CCP4i2.
It seems I have run out of projects!
Over the last 4 years I have created 251 projects. After I created
the last one and worked on it for a while, I went and revisited an
older project. Now I can't access the last project I created from
the gui anymore.
The last project I created would, alphabetically speaking, also be
the last project in the list that appears when you press the "Change
Project" button at the top of the gui. However, the list that
appears seems to only have enough spaces for 250 project names,
which means it shows the first 250 projects (alphabetically) and the
last project isn't on it. When I press the "Directories&PojectDir"
button I can see I did indeed create the project that I'm looking
for and when I check the computer, all the files for this project
are in their corresponding directory.
I guess, if I were to create a 252nd project with a title that would
fall towards the beginning of the alphabetical project list, the gui
would let me do that, but I would then lose what is currently the
last project I can see on the list, which means I would have 2
projects I can't access via the gui.
If I start using CCP4i2 and copy all my old projects across, will it
have the same problem? Has anybody else with a large number of
projects run into this problem?
Should I re-create only the 251st project and set up all new
projects in CCP4i2 and keep the old projects for use in CCP4i instead?
Cheers,
Tony
------------------------------------------------------
Dr. Antonio Ariza
University of Oxford
Sir William Dunn School of Pathology
South Parks Road
Oxford
OX1 3RE
e-mail: antonio.ar...@path.ox.ac.uk<mailto:antonio.ar...@path.ox.ac.uk>
Tel: 00 +44 1865 285655
Links to my public profiles:
ResearchGate<https://www.researchgate.net/profile/Antonio_Ariza>
LinkedIn<https://www.linkedin.com/in/antonioariza1>
GoogleScholar<https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en>
Twitter<https://twitter.com/DrAntonioAriza?lang=en>
Check out my latest paper!!!
Structural insights into the function of ZRANB3 in replication
stress response<http://www.nature.com/articles/ncomms15847>
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------------------------------
Date: Mon, 25 Jun 2018 18:53:46 +0100
From: Jon Agirre <jon.agi...@york.ac.uk>
Subject: Re: I used up all CCP4 projects ... seemingly ...
I would transfer the new project to i2, and keep the ‘legacy’ stuff in i1.
You can access i1 stuff from i2 with the i1 viewer.
Let us know if you need any help with the transition. Happy to receive
feedback and suggestions!
Jon
On Mon, 25 Jun 2018 at 18:27, Antonio Ariza <antonio.ar...@path.ox.ac.uk>
wrote:
Hi all and sorry ... (I thought it best to apologise pre-emptively for
this rather long question).
Ok ... so, I know I should have changed over to CCP4i2 a LOOOONG time ago,
but a student in my lab had trouble transferring his projects from CCP4i to
CCP4i2, so I decided to postpone it ... and I kept postponing it ever
since. I have now run into a problem with the old CCP4i gui, which means I
might have to change over to CCP4i2.
It seems I have run out of projects!
Over the last 4 years I have created 251 projects. After I created the
last one and worked on it for a while, I went and revisited an older
project. Now I can't access the last project I created from the gui anymore.
The last project I created would, alphabetically speaking, also be the
last project in the list that appears when you press the "Change Project"
button at the top of the gui. However, the list that appears seems to only
have enough spaces for 250 project names, which means it shows the first
250 projects (alphabetically) and the last project isn't on it. When I
press the "Directories&PojectDir" button I can see I did indeed create the
project that I'm looking for and when I check the computer, all the files
for this project are in their corresponding directory.
I guess, if I were to create a 252nd project with a title that would fall
towards the beginning of the alphabetical project list, the gui would let
me do that, but I would then lose what is currently the last project I can
see on the list, which means I would have 2 projects I can't access via the
gui.
If I start using CCP4i2 and copy all my old projects across, will it have
the same problem? Has anybody else with a large number of projects run into
this problem?
Should I re-create only the 251st project and set up all new projects in
CCP4i2 and keep the old projects for use in CCP4i instead?
Cheers,
Tony
------------------------------------------------------
* Dr. Antonio Ariza University of Oxford Sir William Dunn School of
Pathology South Parks Road Oxford OX1 3RE*
*e-mail: *antonio.ar...@path.ox.ac.uk
*Tel: 00 +44 1865 285655*
*Links to my public profiles:*
ResearchGate <https://www.researchgate.net/profile/Antonio_Ariza>
LinkedIn <https://www.linkedin.com/in/antonioariza1>
GoogleScholar
<https://scholar.google.co.uk/citations?user=9pAIKV0AAAAJ&hl=en>
Twitter <https://twitter.com/DrAntonioAriza?lang=en>
*Check out my latest paper!!!*
Structural insights into the function of ZRANB3 in replication stress
response <http://www.nature.com/articles/ncomms15847>
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--
Dr Jon Agirre
Royal Society University Research Fellow
York Structural Biology Laboratory / Department of Chemistry
University of York, Heslington, YO10 5DD, York, UK
http://www.york.ac.uk/chemistry/research/ysbl/people/staff/jagirre/
Office: /B/K/065 Phone: +44 (0) 1904 32 8252
Twitter: @alwaysonthejazz
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------------------------------
Date: Mon, 25 Jun 2018 11:59:11 -0700
From: Oleg Sobolev <osobo...@lbl.gov>
Subject: Re: refinement papers
Hi Careina,
On behalf of Pavel Afonine:
This (and references inside) may be a start:
http://scripts.iucr.org/cgi-bin/paper?S0907444912001308
Then may be you could reuse some of existing presentations from here
https://www.phenix-online.org/presentations/
Best regards,
Oleg Sobolev.
On Mon, Jun 25, 2018 at 5:21 AM, Careina Edgooms <
000002531c126adf-dmarc-requ...@jiscmail.ac.uk> wrote:
Hello everyone
I am giving talk about refinement and model building. I wonder if anyone
knows of latest relevant papers on this topic that you could suggest for me?
thank you
Careina
------------------------------
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########################################################################
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End of CCP4BB Digest - 24 Jun 2018 to 25 Jun 2018 (#2018-154)
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