[ccp4bb] CNS to PDB format conversion

Hi all, How to convert CNS coordinate file to PDB file format that can be used for refinement in refmac. Is there any utility in CCP4 or other GUI based interface that can convert CNS output file to PDB . Thanks . Manoj Penn Sate University Biochemistry State College PA

Re: [ccp4bb] CNS to PDB format conversion

The CNS script cns_to_o.inp will convert CNS .mtf files to .pdb files. You can edit the CNS form using the CNS web interface and then run the script from the command line. Alternatively, I think the CCP4 program COORDCONV will convert XPLOR/CNS files to PDB format (I haven't done this, however.

Re: [ccp4bb] CNS to PDB format conversion

Hi Thanks for your quick response. a) I have used CNS script cns_to_o.inp and then used the CCP4 COORDCONV utility with convert file in PDB to PDB option and input the unit cell information. (have tried Xplor to PDB option earlier, it failed with input error). b) Then I run refmac

Re: [ccp4bb] CNS to PDB format conversion

Manoj Saxena wrote: Hi all, How to convert CNS coordinate file to PDB file format that can be used for refinement in refmac. Is there any utility in CCP4 or other GUI based interface that can convert CNS output file to PDB . Thanks . Manoj Penn Sate University Biochemistry State College P

Re: [ccp4bb] CNS to PDB format conversion

That could be due to anything - a really useless message.. You arent trying to rerun an older refmac script are you - the rerun job button was broken at some point. If you "reset defalt parameters" and then set up the job again it might work.. Eleanor Manoj Saxena wrote: Hi Thanks for yo