Re: [ccp4bb] Co-crystallization and thermal shift assay

2021-02-26 Thread Saif Mohd
Thank you everyone for the detailed explanations/suggestions and sharing your successful experience. It is very helpful. Earlier I had thought that maybe with ΔTm, I could select the most promising molecules. But now it is unlikely the case. I should have also mentioned that the IC50 values for a

Re: [ccp4bb] Co-crystallization and thermal shift assay

2021-02-25 Thread Maria Cristina Nonato
*Dear Saif* *Hope you are doing well and safe!* 1) How much change in Tm (ΔTm) in a thermal shift assay is considered to be significant ? *As it has already been mentioned there is no specific cutoff for deltaTm to be considered significant. DeltaTm depends on many factors, including the type o

Re: [ccp4bb] Co-crystallization and thermal shift assay

2021-02-25 Thread Prem Prakash
Hi Saif, If your goal is to perform co-crystallization, I am completely agreed with David's suggestions. Delta Tm does matter in the co-crystallization but that's not always the case. I have some experience with protein complexes where I successfully co-crystallized by using really high molar rat

[ccp4bb] Fwd: [ccp4bb] Co-crystallization and thermal shift assay

2021-02-25 Thread mesters
Hello, we had an interesting case in the lab many years ago... Using the shift-assay, a student managed to identify conditions that markedly stabilized the protein of interest. To cut a long story short, in the end it turned out conditions were identified that gave monomers while the biologic

Re: [ccp4bb] Co-crystallization and thermal shift assay

2021-02-25 Thread David Briggs
ee MX representative == about.me/david_briggs From: CCP4 bulletin board on behalf of Saif Mohd Sent: 25 February 2021 14:55 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Co-crystallization and thermal shift assay Hello everyone, 1) How much change in Tm (ΔTm

[ccp4bb] Co-crystallization and thermal shift assay

2021-02-25 Thread Saif Mohd
Hello everyone, 1) How much change in Tm (ΔTm) in a thermal shift assay is considered to be significant ? 2) A negative ΔTm infers that the compound is making the protein unstable. In such a case, will the co-crystallization be difficult or just impossible or on the contrary it shouldn't matter