[ccp4bb] comparing coordinates- SUMMARY

2010-04-30 Thread Nicholas Keep
Thanks for the many emails I have received. Particularly to Ed who wrote and posted a script to the board and other people who offered to do it over the weekend. I have achieved what I want with the unsupported ccp4 program compar (Plea to CCP4 support- increase the array sizes by an order of

Re: [ccp4bb] Comparing coordinates

2010-04-30 Thread Ed Pozharski
On Fri, 2010-04-30 at 13:35 +0100, Nicholas Keep wrote: > If anyone has a piece of software that would do this it would be > great. > How about this (this is a single line) --- grep 'ATOM\|HETATM' file1.pdb file2.pdb |grep -v REMARK | cut -d: -f 2 | cut -c 13-54 | sort | awk 'BEGIN {FIELDWIDTHS

[ccp4bb] Comparing coordinates

2010-04-30 Thread Nicholas Keep
I want to compare two sets of coordinates (starting and finishing models for molecular replacement) and output distances between pairs. Can anyone suggest a way of doing this. The atoms have the same atom names but not all atoms in the starting model are in the final. LSQKAB does this and ou