[ccp4bb] Error message while refining protein-DNA complex structure in Refmac5

2009-03-18 Thread E rajakumar
Dear Garib Thank you. After removing SCALE card in the pdb file, refinement is completed somthly. Rajakumara --- Garib Murshudov ga...@ysbl.york.ac.uk wrote: It seems that something may be wrong with your input file. Specifically with the SCALE card in the pdb file. Could you please

Re: [ccp4bb] Error message while refining protein-DNA complex structure in Refmac5

2009-03-17 Thread E rajakumar
Dear Garib Thank you very much as you suggested, I removed SCALE card in the pdb file, then it is running smothly. Rajakumara --- Garib Murshudov ga...@ysbl.york.ac.uk wrote: It seems that something may be wrong with your input file. Specifically with the SCALE card in the pdb file.

[ccp4bb] Error message while refining protein-DNA complex structure in Refmac5

2009-03-16 Thread E rajakumar
Dear All I am refining proitein-DNA complex structure in Refamac5. When I used coordinate file containing 2 bases less, then the refinement is running smoth and perfect. But when I built 2 exta bases to the existing DNA in the coot then refinement is failed with the following error message.

Re: [ccp4bb] Error message while refining protein-DNA complex structure in Refmac5

2009-03-16 Thread Yusuf Akhter
Hi Rajkumar, Few days back similar problem was happening to me also. I just changed the version of Coot and it worked. In my case only Coot (ver. 4.1) was doing the job correct. Please try Coot (version 4.1) in case you are using any of other versions. HTH, Y On Mon, Mar 16, 2009 at 11:43