Dear all,
I would like to compile the CCP4 in mac book pro with intel cpu. The purpose of installing ccp4 using source code is to compile the clipper library. Although I have already installed ccp4 dmg package provided for mac os, I could not compile the clipper using ccp4. The problem occurred due to the g77 fortran library and detail error message is shown below. I have only gfortran as default provided by gnu for Mac OS. I also installed g77 manual but my problem is not still solved. Do you know the solution of this problem? Here is error while configure checking for Fortran 77 libraries... rm: conftest.dSYM: is a directory -lcrt1.10.5.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm checking for dummy main to link with Fortran libraries... rm: conftest.dSYM: is a directory unknown configure: error: linking to Fortran libraries from C fails See `config.log' for more details. Inside config.log ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i386-apple-darwin11.2.0 ac_cv_build_alias=i386-apple-darwin11.2.0 ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set=set ac_cv_env_CC_value=gcc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-O2 -DGFORTRAN -DPROTOTYPE' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=g++ ac_cv_env_F77_set=set ac_cv_env_F77_value=gfortran ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_f77_compiler_gnu=yes ac_cv_f77_dummy_main=unknown ac_cv_flibs=' -lcrt1.10.5.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm' ac_cv_fortran_dummy_main=unknown ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=i386-apple-darwin11.2.0 ac_cv_host_alias=i386-apple-darwin11.2.0 ac_cv_objext=o ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CC=gcc ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_PERL=perl ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_g=yes ac_cv_prog_egrep='grep -E' ac_cv_prog_f77_g=yes ac_cv_prog_f77_v=-v ac_cv_prog_gcc_2_90=yes ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld lt_cv_path_LDCXX=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld lt_cv_path_NM=/usr/bin/nm lt_cv_path_SED=/usr/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=196608 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([BCDEGRST][BCDEGRST]*\\)[ ][ ]*_\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 _\\2 \\2/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run aclocal-1.9' ALLOCA='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run tar' AR='ar' AUTOCONF='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run autoconf' AUTOHEADER='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run autoheader' AUTOMAKE='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run automake-1.9' AWK='awk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-O2 -DGFORTRAN -DPROTOTYPE' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' ECHO='/bin/echo' ECHO_C='ECHO_N='' ECHO_T='' EGREP='grep -E' EXEEXT='' F77='gfortran' FFLAGS='-g -O2' FFTW_MPI_INCLUDELIST='' FFTW_MPI_LIBLIST='' FFTW_MPI_PROGLIST='' FFTW_PREFIX1='xyz' FFTW_PREFIX='' FFTW_THREADS_INCLUDELIST='' FFTW_THREADS_LIBLIST='' FFTW_THREADS_PROGLIST='' FLIBS=' -lcrt1.10.5.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm' INSTALL_DATA='cp -p' INSTALL_PROGRAM='cp -p' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' LDFLAGS='' LIBOBJS='' LIBS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/missing --run makeinfo' MPICC='' MPILIBS='' OBJEXT='o' PACKAGE='fftw' PACKAGE_BUGREPORT='' PACKAGE_NAME='' PACKAGE_STRING='' PACKAGE_TARNAME='' PACKAGE_VERSION='' PATH_SEPARATOR=':' PERL='perl' PTHREAD_CC='' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHARED_VERSION='' SHARED_VERSION_INFO='2:7:0' SHELL='/bin/sh' STRIP='strip' THREADLIBS='' VERSION='2.1.5' ac_ct_AR='ar' ac_ct_CC='' ac_ct_CXX='' ac_ct_F77='' ac_ct_RANLIB='ranlib' ac_ct_STRIP='strip' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/bin' build='i386-apple-darwin11.2.0' build_alias='' build_cpu='i386' build_os='darwin11.2.0' build_vendor='apple' datadir='${prefix}/share' exec_prefix='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1' host='i386-apple-darwin11.2.0' host_alias='' host_cpu='i386' host_os='darwin11.2.0' host_vendor='apple' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib/fftw/instal l-sh' libdir='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='$(mkinstalldirs)' oldincludedir='/usr/include' prefix='/Users/rojan/Myspace/tmp/clipper_test/ccp4-6.1.1' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define FFTW_ENABLE_FLOAT 1 #define HAVE_DLFCN_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_UNISTD_H 1 #define PACKAGE "fftw" #define PACKAGE_BUGREPORT "" #define PACKAGE_NAME "" #define PACKAGE_STRING "" #define PACKAGE_TARNAME "" #define PACKAGE_VERSION "" #define STDC_HEADERS 1 #define VERSION "2.1.5" #endif #ifdef __cplusplus extern "C" void exit (int); configure: exit 1