Re: [ccp4bb] Freezing crystal

2012-02-08 Thread Theresa H. Hsu
A little off from the original question. Why don't small crystals dissolve to make a bigger crystal, especially when the small ones grow on top of each other? Can the clustered 3D crystals (I think it is called macroscopic twin) be used for full data collection? Again, thank you. Theresa

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Edward A. Berry
Bosch, Juergen wrote: Hi Dirk, I remember a neat paper don't recall who wrote it. I think it was in Acta D where the authors made a tiny probe the size of an elongated crystal glued to a [/Advertisement on] Hampton loop [/Advertisement off]. The probe was a temperature sensor and they recorde

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Jacob Keller
> Sad was the day when I mounted this puppy and it shot to 8-10A. Room > temperature. And messing around with cryos didn't help either. But if that puppy had been smaller, it might have diffracted even worse, and just think if that little icy crystal had been bigger... JPK > > > Can't remember

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Francis E Reyes
I'm going with Jurgen on this one. http://img27.imageshack.us/img27/3232/pastedgraphic1.png Sad was the day when I mounted this puppy and it shot to 8-10A. Room temperature. And messing around with cryos didn't help either. Can't remember the size, but I think I had scooped it with a 0.8 mm

Re: [ccp4bb] Freezing crystal (Liquid Propane Crystal Prep)

2012-02-07 Thread Steven Herron
Jürgen Quote: "Propane for whatever reason has gone extinct in certain areas of the world :-) ." I went to SSRL (Stanford) with a colleague who wanted to use liquid propane. We had to go through a mound of paper work to get permission bring propane on site and set up the experiments. I do

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Enrico Stura
: Tuesday, February 07, 2012 11:52 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Freezing crystal BIGGER is not always BETTER? Theoretically it should be better because you have more scattering matter. Enrico: what you state above is only true if you ignore absorption of the X-ray by the

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread David Schuller
On 02/07/12 11:12, Dirk Kostrewa wrote: Dear Jürgen, Am 07.02.12 16:58, schrieb Bosch, Juergen: Then one last remark, LN2 versus cryo-stream freeze. Dipping in LN2 leads to a quicker freeze of your material. Are you sure? There was a publication by Warkentin et al. [1] about a cold gas lay

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Jim Pflugrath
Just a thought for those that mentioned propane and ethane, I would like to suggest that they try carbon tetrafluoride (CF4) instead. It certainly should be much safer. It melts at 90 K and boils at 145 K, so you know you are below 145 K if you see it as a liquid.

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Bosch, Juergen
Hi Dirk, I remember a neat paper don't recall who wrote it. I think it was in Acta D where the authors made a tiny probe the size of an elongated crystal glued to a [/Advertisement on] Hampton loop [/Advertisement off]. The probe was a temperature sensor and they recorded the cooling rate under

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Dirk Kostrewa
Dear Jürgen, Am 07.02.12 16:58, schrieb Bosch, Juergen: Then one last remark, LN2 versus cryo-stream freeze. Dipping in LN2 leads to a quicker freeze of your material. Are you sure? There was a publication by Warkentin et al. [1] about a cold gas layer above liquid nitrogen that reduces the

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Bosch, Juergen
ginal Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Theresa H. Hsu Sent: Monday, February 06, 2012 11:00 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK><mailto:CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Freezing crystal Hi all Thanks f

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Enrico Stura
resa H. Hsu Sent: Monday, February 06, 2012 11:00 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Freezing crystal Hi all Thanks for all the suggestions which I will try soon. How do the crystallization condition (PEG vs. salts like ammonium sulfate

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Bosch, Juergen
board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Theresa H. Hsu Sent: Monday, February 06, 2012 11:00 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] Freezing crystal Hi all Thanks for all the suggestions which I will try soon. How do the crystallization condi

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Jacob Keller
; From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of >> Theresa H. Hsu >> Sent: Monday, February 06, 2012 11:00 PM >> To: CCP4BB@JISCMAIL.AC.UK >> Subject: Re: [ccp4bb] Freezing crystal >> >> Hi all >> >> Thanks for all the suggestions which I wi

Re: [ccp4bb] Freezing crystal

2012-02-07 Thread Mark J van Raaij
Behalf Of > Theresa H. Hsu > Sent: Monday, February 06, 2012 11:00 PM > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] Freezing crystal > > Hi all > > Thanks for all the suggestions which I will try soon. > > How do the crystallization condition (PEG vs. sa

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Herman . Schreuder
H. Hsu Sent: Monday, February 06, 2012 11:00 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Freezing crystal Hi all Thanks for all the suggestions which I will try soon. How do the crystallization condition (PEG vs. salts like ammonium sulfate) affect the croyprotectant condition? Do factors

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Theresa H. Hsu
Hi all Thanks for all the suggestions which I will try soon. How do the crystallization condition (PEG vs. salts like ammonium sulfate) affect the croyprotectant condition? Do factors like presence of low concentration of high molecular weight PEG (> 2000) mean PEG is better? Do buffers and sa

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Prince, D Bryan
CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Theresa H. Hsu Sent: Sunday, February 05, 2012 5:49 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Freezing crystal Hi all Is there a list of conditions to be tried *first* for cryoprotectant? My crystals diffract at room temperature capi

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Enrico Stura
Theresa, Several suggestions that have been given are excellent advice: Li salts suggested by Tommi Kajander is what I would use in particular: 80% saturated lithium sulfate. This should work. I would be very surprised if it does not. Malonate as suggested by Sean Seaver is another great idea,

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Kris Tesh
Biochemistry University of Houston From: Tommi Kajander To: CCP4BB@JISCMAIL.AC.UK Sent: Mon, February 6, 2012 1:04:13 AM Subject: Re: [ccp4bb] Freezing crystal if you use oil do direct dry Paratone-N, with paraffin oil is not as good. Li-salts should work also - i

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Ed Pozharski
On Sun, 2012-02-05 at 22:49 +, Theresa H. Hsu wrote: > Crystals are from 2 M ammonium sulfate. Sodium malonate is your friend http://scripts.iucr.org/cgi-bin/paper?fw5004 -- Oh, suddenly throwing a giraffe into a volcano to make water is crazy?

Re: [ccp4bb] Freezing crystal

2012-02-06 Thread Savvas Savvides
Dear Theresa Cryo-cooling the crystals straight out of their drops or after brief incubations in crystal stabilization solutions containing >2M ammonium sulfate may be the way to go. Here is a copy/paste piece from Kyndt et al (2007) Biochemistry 46, 95-105. All the best Savvas Aliquots (0.5 í L

Re: [ccp4bb] Freezing crystal

2012-02-05 Thread Mark J van Raaij
if your crystals are from 2 M AmSO4 without buffer, try to measure the pH in the drop, if possible. Or if you have plenty of crystals, transfer to 2 M AmSO4 buffered at a wide range of different pHs to see where the crystals are stable, before adding cryoprotectant. In the end, you may need to g

Re: [ccp4bb] Freezing crystal

2012-02-05 Thread Tommi Kajander
if you use oil do direct dry Paratone-N, with paraffin oil is not as good. Li-salts should work also - i would almos imgaine you can freeze directly from so high (NH4)2SO4 conc. but perhaps not. little bit (10%) glycerol probably does it also.. Tommi On Feb 6, 2012, at 12:55 AM, Vineet Gaur wr

Re: [ccp4bb] Freezing crystal

2012-02-05 Thread Eric Larson
Hi Theresa, A good place to start when searching for suitable cryo conditions are the tables in these references: Garman, et al. J. Appl. Cryst. (1996). 29, 584-587. McFerrin, et al. J. Appl. Cryst. (2002). 35, 538-545. hope they help and good luck. Eric __ Eric Larson Boehrin

Re: [ccp4bb] Freezing crystal

2012-02-05 Thread Sean Seaver
Hi Theresa, Try glycerol at 10 % with 5 % increments up to 30 % v/v. You may also be able to attain protection by increasing the ammonium sulfate concentration along with incremental glycerol approach. Crystallization of RNA/protein complexes by Garber and colleagues (Acta Cryst. (2002). D58,

Re: [ccp4bb] Freezing crystal

2012-02-05 Thread Vineet Gaur
Hi Theresa, Once I had crystals in 3.5 M Amm. Sulfate. I used Paraffin oil and Paraton-N-oil (in 1:1 ratio). I also used 30% Xylatol. Best, Vineet On Sun, Feb 5, 2012 at 5:49 PM, Theresa H. Hsu wrote: > Hi all > > Is there a list of conditions to be tried *first* for cryoprotectant? My > crysta

[ccp4bb] Freezing crystal

2012-02-05 Thread Theresa H. Hsu
Hi all Is there a list of conditions to be tried *first* for cryoprotectant? My crystals diffract at room temperature capillary but no in 30% PEG 400. Crystals are from 2 M ammonium sulfate. Thank you. Theresa