Re: [ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Pavol Skubak
can be achieved by running SAD only (only using the MR model heavy atoms). It differs from case to case. It is usually a good idea to try both approaches if possible. Greetings, Pavol >> From: Nick Huang >> Date: Sat, Jan 31, 2015 at 5:46 PM >> Subject: [ccp4bb] How long do

Re: [ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Nick Huang
Hi Gabriel, My datasize is very small with a very low resolution. Was there an error output when your refmac process didn't converge? I started a SAD process along as you suggested and will see what is going to happen. Thanks NIck >> Hi Nick, In my experience, this is too long and there is pr

[ccp4bb] How long does it take crank 2 (refmac step) to run?

2015-01-31 Thread Nick Huang
Hi all, I started a crank 2 process to run a SAD model building with a partial model input yesterday. From the log file, crank 2 was in the step of "Starting process of iterative refinement and (substructure) atom picking" and had been running a whole night without any further output. Does anybody