[ccp4bb] Ligand PDB

Dear All, What is the best way to find the coordinates of a ligand. I do not find teh ligand in Pdb.org. I am trying to draw it in prodrug but the server is showing error. Also if I draw it how do I make sure that the geometry is correct. Thanks, Mariah -- Mariah Jones Department of Biochemistr

Re: [ccp4bb] Ligand PDB

Dear protein.chemist: Try elbow.builder or phenix.elbow or whatever it is currently called. It will optimize the geometry. Good.luck Bill.Scott On Tue, July 21, 2009 1:23 pm, protein.chemist protein.chemist wrote: > Dear All, > > What is the best way to find the coordinates of a ligand. >

Re: [ccp4bb] Ligand PDB

ubject: [ccp4bb] Ligand PDB > To: CCP4BB@JISCMAIL.AC.UK > Date: Tuesday, July 21, 2009, 4:23 PM > Dear All, > > What is the best way to find the coordinates of a ligand. > I do not find teh ligand in Pdb.org.  I am trying to draw > it in prodrug but the server is showing error. &