Dear Bernhard,
Funnily enough we wanted to do precisely that yesterday and
the kind folks at the PDBe sent us this csv file (attached,
but small).
It is the result of a query in the PDBe/chem database of all
residues for which the molecule type is "amino acid". Other
than all the cases you ar
ject: Re: [ccp4bb] Modified residue list
On Tuesday, July 26, 2011 10:46:34 am Bernhard Rupp (Hofkristallrat a.D.)
wrote:
> Dear All,
>
> Is there a simple way (or already an existing list) to extract/parse
> from the heterodictionaries or monomer libraries which 3-letter
> s
On Tuesday, July 26, 2011 10:46:34 am Bernhard Rupp (Hofkristallrat a.D.) wrote:
> Dear All,
>
> Is there a simple way (or already an existing list) to extract/parse from
> the heterodictionaries or monomer libraries which 3-letter symbols are
> actually modified standard amino acids (as compared
If you simply want a list of modified residues, here is one that I
compiled a while ago. More details on each can be found at LigandExpo.
'0CS' => 'ALA', '0NC' => 'ALA', 'AA3' => 'ALA',
'AA4' => 'ALA', 'ABA' => 'ALA', 'AHO' => 'ALA', 'AHP' => 'ALA', 'AIB' =>
'ALA',
'ALC' => 'ALA', 'ALM' => 'ALA
On Tue, Jul 26, 2011 at 10:46 AM, Bernhard Rupp (Hofkristallrat a.D.) <
hofkristall...@gmail.com> wrote:
> Is there a simple way (or already an existing list) to extract/parse from
> the heterodictionaries or monomer libraries which 3-letter symbols are
> actually modified standard amino acids (as
Dear All,
Is there a simple way (or already an existing list) to extract/parse from
the heterodictionaries or monomer libraries which 3-letter symbols are
actually modified standard amino acids (as compared to bona fide ligands,
solvent molecules etc)?
Thx!!
BR
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