JLigand from this site
http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html
should be able to create link you want. And then you can add link
record on your pdb as in the template:
http://www.ysbl.york.ac.uk/refmac/data/template_link.txt
I hope it addresses the problem you are facing.
You can try JLigand from
http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html
to create link and then add link record on your pdb
Garib
On 9 Oct 2009, at 03:40, Sampath Natarajan wrote:
Dear All,
I’m currently refining the structure (2.0 A) with a cofactor PLP.
The PLP density is clea
Dear Sampath!
Refmac5's dictionary uses LLP to encode the
"LYSINE-PYRIDOXAL-5*-PHOSPHATE", a modified lysine residue with its NZ-
amino group covalently bound via a Schiff base to a pyridoxal phosphate.
See http://www.ccp4.ac.uk/html/refmac5/dictionary/list-of-ligands.html
Have a look at the
Sampath Natarajan wrote:
I’m currently refining the structure (2.0 A) with a cofactor PLP. The
PLP density is clearly indicates lysine residue is covalently bound
with PLP cofactor. But I don’t know how to link the cofactor and
lysine residue for further refinement. Any suggestions on how to
Dear All,
I’m currently refining the structure (2.0 A) with a cofactor PLP. The PLP
density is clearly indicates lysine residue is covalently bound with PLP
cofactor. But I don’t know how to link the cofactor and lysine residue for
further refinement. Any suggestions on how to create the link betwe
