Dear all,
When calculating the RMSD between structures of homologous proteins,
where there are large changes in the loop region(s), which RMSD should be
reported - an overall value which may be inflated due to the deviations in the
loops, or separate values for the core and loop
Sreetama,
See the following URL whether it is
useful to solve your issue
http://cluster.physics.iisc.ernet.in/3dss/
best,
Sekar
Dear all,
When calculating the RMSD between structures of homologous
proteins, where there are large changes in the loop region(s), which RMSD
should
between structures of homologous proteins
Dear all,
When calculating the RMSD between structures of homologous proteins,
where there are large changes in the loop region(s), which RMSD should be
reported - an overall value which may be inflated due to the deviations in the
loops
.
Best,
Herman
*Von:* CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] *Im Auftrag von
*sreetama das
*Gesendet:* Mittwoch, 13. August 2014 08:12
*An:* CCP4BB@JISCMAIL.AC.UK
*Betreff:* [ccp4bb] RMSD between structures of homologous proteins
Dear all,
When calculating
Gesendet: Mittwoch, 13. August 2014 08:12
An: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Betreff: [ccp4bb] RMSD between structures of homologous proteins
Dear all,
When calculating the RMSD between structures of homologous proteins,
where there are large changes in the loop
Gesendet: Mittwoch, 13. August 2014 08:12
An: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK
Betreff: [ccp4bb] RMSD between structures of homologous proteins
Dear all,
When calculating the RMSD between structures of homologous
proteins, where there are large changes in the loop region(s
