[ccp4bb] Scripting for COOT

2017-11-16 Thread Martín Martínez Ripoll
Dear all, I am trying to write a long script that, among others, runs COOT, and for this purpose we use something like: coot --pdb refmac-out.pdb--auto refmac-out.mtz However, I do not know how to include in the script an instruction or keyword to centre at a particular residue numbe

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Paul Emsley
On 16/11/2017 08:08, Martín Martínez Ripoll wrote: I am trying to write a long script that, among others, runs COOT, and for this purpose we use something like: coot  --pdb  refmac-out.pdb    --auto refmac-out.mtz However, I do not know how to include in the script an instruction or keyword t

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Edward A. Berry
(set-go-to-atom-molecule 0) (set-go-to-atom-chain-residue-atom-name "B" 42 " CA ") Would those be also on the command line, or where? On 11/16/2017 07:19 AM, Paul Emsley wrote: On 16/11/2017 08:08, Martín Martínez Ripoll wrote: I am trying to write a long script that, among others, runs COOT

Re: [ccp4bb] Scripting for COOT

2017-11-16 Thread Paul Emsley
On 16/11/2017 13:28, Edward A. Berry wrote: (set-go-to-atom-molecule 0) (set-go-to-atom-chain-residue-atom-name "B" 42 " CA ") Would those be also on the command line, or where? You can use them on the command line like this: coot --pdb input.pdb -c '(set-go-to-atom-molecule 0)(set-go-to-ato

Re: [ccp4bb] Scripting for COOT

2017-11-17 Thread Martín Martínez Ripoll
ntíficas Spanish National Research Council -Mensaje original- De: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] En nombre de Paul Emsley Enviado el: jueves, 16 de noviembre de 2017 17:32 Para: CCP4BB@JISCMAIL.AC.UK Asunto: Re: [ccp4bb] Scripting for COOT On 16/11/2017 13:28, Edward A

Re: [ccp4bb] Scripting for COOT

2017-11-20 Thread B.Lohkamp
National Research Council -Mensaje original- De: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] En nombre de Paul Emsley Enviado el: jueves, 16 de noviembre de 2017 17:32 Para: CCP4BB@JISCMAIL.AC.UK Asunto: Re: [ccp4bb] Scripting for COOT On 16/11/2017 13:28, Edward A. Berry wrote: (se

[ccp4bb] AW: [ccp4bb] Scripting for COOT

2017-11-16 Thread Herman . Schreuder
get the view and options you like. Best, Herman Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Martín Martínez Ripoll Gesendet: Donnerstag, 16. November 2017 12:09 An: CCP4BB@JISCMAIL.AC.UK Betreff: [EXTERNAL] [ccp4bb] Scripting for COOT Dear all, I am trying to write