Dear All
I have a data at 2.75A. I process it in Space group P3121, using HKL3000.
Run a molrep,find three molecule in a unit cell. I am trying to refine it
with phenix, the R and R-free stuck at 34 and 41 respectively.
Crystal: The crystal seems multiple thin plates and I tried to freeze the
pos
Hello Everyone,
We are computationally averaging several homologous protein structures into a
single structure. This of course will lead to a single protein structure that
possesses poor biophysical characteristics of bond lengths, bond angles, steric
hindrance, etc. Therefore, we will need a r
Hi Bashir,
if you send me the data and model (directly to my email address, not the
whole list), then I will have a look.
Also, please note there is Phenix mailing list for Phenix specific
questions.
Pavel
On Fri, Feb 15, 2013 at 12:35 PM, Muhammed bashir Khan <
muhammad.bashir.k...@univie.ac.a
A very likely possibility (but there may be others) is merohedral
twinning, which can and often does occur in this space group, and these
are typical R-values you would get stuck to in case of partial
merohedral twinning. Checking the log file of truncate should be
informative in this respect.
On Mon, Jul 23, 2012 at 9:50 AM, Scott Foy wrote:
> We are computationally averaging several homologous protein structures into a
> single structure. This of course will lead to a single protein structure that
> possesses poor biophysical characteristics of bond lengths, bond angles,
> steric h
Scott,
you are asking for opinions when you should be asking for hard data.
CNS, refmac and phenix all can regularize a structural model. If your
primary consideration is speed, you should simply try all three and
compare cpu time.
Cheers,
Ed.
On 07/23/2012 12:50 PM, Scott Foy wrote:
He
I plan to just clean up the data.
Dear All,
Do you need some help for structure refinement or structure analysis?
I will be very happy to work for you, while I am looking for next
position.
To me, solving structure is a puzzle game and for fun.
Regards,
Kevin Jin