nchain and 2 for CAs
add_lsq_match(25,35,"B",25,35,"D",2)
apply_lsq_matches(0,1)#assuming imol 1 is
the moving one and imol 0 is the reference
Zhijie
-Original Message-
From: yanfeng zhou
Sent: Thursday, February 12, 2015 9:03 AM
To: Zhijie L
I find that the superposition in CCP4MG is the most flexible and easy to
use implementation of any program I've used. There are multiple
superposition methods each with the ability to select residues or atoms.
It's very powerful.
CCP4MG also happens to produce very pretty pictures!
Isaac
On 5 Feb
d let
Coot run it, or you can type them one by one in Calculate-Scripting-python.
Zhijie
From: Kgosisejo, Oarabile
Sent: Thursday, February 05, 2015 5:41 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Superposition of select residues
Hi all,
Does anyone know of a program to use to superpos
Subject: Re: [ccp4bb] Superposition of select residues
The free ICM-Browser from MolSoft can do this -
http://www.molsoft.com/icm_browser.html It will calculate the Ca-atom,
backbone and heavy atom differences between multiple structures and superimpose.
To do this:
1. Download and install ICM
The free ICM-Browser from MolSoft can do this -
http://www.molsoft.com/icm_browser.html It will calculate the Ca-atom,
backbone and heavy atom differences between multiple structures and
superimpose.
To do this:
1. Download and install ICM-Browser here (Win, Mac or Linux)
http://www.molsoft.c
The program chimera will align homologous structures from which you can
generate a sequence alignment (based on the structural alignment)
http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/matchalign/matchalign.html
~JH
On 05.02.2015 14:41, Kgosisejo, Oarabile wrote:
Hi all,
Does anyo
Hi all,
Does anyone know of a program to use to superpose only selected protein
residues, e.g. enzyme active site residues. I solved my structure using
molecular replacement now I want to compare its active site to those of
homologous structures. I have used the DALI server before but I had to
