Dear all,
Firstly - many thanks to Kay Diederichs and Graeme Winter.
The “memory” error was in fact due to certain diffraction images having very
few (weak), if any spots - essentially they were ‘blank’.
By excluding these images, and with a combination of Xia2, plus XDS + Aimless,
I was finall
Dear Tony,
I renamed your LP_01.tmp to INTEGRATE.LP and ran XDSGUI - this shows nicely
that after frame 150 things "fall over".
So pls try the recommendations in the "Difficult datasets" article of XDSwiki.
Normally you should not need to run two processing jobs; just prevent
refinement from "
Dear Tony,
OK, clearly Tim's suggestion is spot on, to remove the offending images
from processing (this is easily done by splitting your input xinfo or the
automatically generated one, I will copy an example below)
I suspect that the "memory error" results from
IMAGE IER SCALE NBKG NOVL N
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Antony,
you should check images 189, 190,... XDS only finds 2 strong
reflections (NSTRONG). As the LP-file indicates, these are not enough
to carry out refinement. My guess is these are blank images - XDS can
skip over them if they are not too ma
Dear CCP4-ers.
Many apologies for the previous post (with attachments).
However, it is true - somewhat crappy data, that I can’t seem to reprocess
with XDS / xia2.
Tony.
HI Graeme,
Please find below, what I think it is that you need? Files attached, plus
relevant text clips,.
NB: everythi
Dear Tony,
Sorry to hear you are having trouble - I have never seen this message
before. Please could you send me (off list) the output of the last XDS job
ran before this one and (ideally) the XDS.INP file in the offending area?
There must be something very odd going on here.
Thanks & best wishe
À : CCP4BB@JISCMAIL.AC.UK
Objet : [ccp4bb] Xia2 / XDS issues
Dear CCP4-ers.
I am (trying) to use Xia2 (svn/Build 4599) to process some diffraction data.
However, I am coming across the following issue, which I don’t seem to be able
to solve...
Integrat
Dear CCP4-ers.
I am (trying) to use Xia2 (svn/Build 4599) to process some diffraction data.
However, I am coming across the following issue, which I don’t seem to be able
to solve...
Integrating SWEEP1
Status: error "[XDS] cannot allo
