Re: [ccp4bb] how convert SF to intensities

2011-05-13 Thread George T. DeTitta
: Eleanor Dodson Sender: CCP4 bulletin board Date: Fri, 13 May 2011 14:03:06 To: Reply-To: Subject: Re: [ccp4bb] how convert SF to intensities On 05/12/2011 08:13 PM, Fulvio Saccoccia wrote: > Dear ccp4 users, > I need to generate intensities from a model (.pdb). That is, I think that a >

Re: [ccp4bb] how convert SF to intensities

2011-05-13 Thread Eleanor Dodson
On 05/12/2011 08:13 PM, Fulvio Saccoccia wrote: Dear ccp4 users, I need to generate intensities from a model (.pdb). That is, I think that a correct procedure could be to convert model to structure factor and then obtain intensities squaring the SF. Does anyone know how can I do? Thanks in advan

Re: [ccp4bb] how convert SF to intensities

2011-05-12 Thread sujata halder
Hi, Use SFALL to convert coordinates to structure factors...and then use mtz2various to convert to intensities...use the scalepack format under mtz2various. On Thu, May 12, 2011 at 3:13 PM, Fulvio Saccoccia < fulvio.saccoc...@uniroma1.it> wrote: > Dear ccp4 users, > I need to generate intensitie

Re: [ccp4bb] how convert SF to intensities

2011-05-12 Thread Ed Pozharski
> That is, I think that a correct procedure could be to convert model to > structure factor and then obtain intensities squaring the SF. > Does anyone know how can I do? Use sftools > -- "Hurry up before we all come back to our senses!" Julian, King of Lemurs

Re: [ccp4bb] how convert SF to intensities

2011-05-12 Thread Pavel Afonine
Hi Fulvio, a possible option that will do what you want (almost - you will get SF that you will have to square): http://phenix-online.org/documentation/fmodel.htm Pavel. On Thu, May 12, 2011 at 12:13 PM, Fulvio Saccoccia < fulvio.saccoc...@uniroma1.it> wrote: > Dear ccp4 users, > I need to gen

[ccp4bb] how convert SF to intensities

2011-05-12 Thread Fulvio Saccoccia
Dear ccp4 users, I need to generate intensities from a model (.pdb). That is, I think that a correct procedure could be to convert model to structure factor and then obtain intensities squaring the SF.Does anyone know how can I do?Thanks in advanceFulvio Saccoccia