Hi all,
I'd love to have a surface representation of my structure in which I
plot the hydrophobic exposed residues.
A bit like an electrostatic potential plotted onto the surface, but
rather than hydrophilic, an hydrophobic one.
Is there a nice web server or a program that does that or you guys
ju
At the bottom of the page
http://cmgm.stanford.edu/classes/grasp/
is the code how to colour code hydrophobic residues with GRASP - this is
not a calculation, I'm afraid, just colour coding.
As far as I know GRASP does not have a web-interface. You can install
grasp in a Windows installation wi
Hi!
To my knowledge one could use the program GRID available on
http://www.moldiscovery.com/soft_grid.php to calculate the hydrophobic
molecular-interaction field on the surface of the protein. But I guess
it comes with a small license fee for academic users.
Best Regards,
Madhu
Sebastiano P
In the paper "Computational analyses of the surface properties of
protein-protein interfaces" Acta Cryst. (2007). D63, 50-57, it is described how
to do it using a GRID-type hydrophobic potential in CCP4MG. However, I could not
find the corresponding menus in CCP4MG when I (quickly) tried.
Mic
