Re: [ccp4bb] off topic: problematic protein

2011-04-21 Thread Savvas Savvides
I would like to thank all of you who promptly replied to my posting with so many ideas and suggestions (18 answers so far). I will post a summary soon. best wishes to all Savvas On Apr 19, 2011, at 12:48 PM, Savvas Savvides wrote: Dear colleagues We are working on a large bacterial

Re: [ccp4bb] off topic: problematic protein

2011-04-20 Thread Tommi Kajander
I would think thing here is that this protein actually associates to those lipid nanodiscs...(around the disc) and Na cholate CMC is around 10 mM. so, yes you can solubilise proteins that bind lipids, the question is does this protein bind lipids or not? or is it just scrambled or

[ccp4bb] off topic: problematic protein

2011-04-19 Thread Savvas Savvides
Dear colleagues We are working on a large bacterial protein (featuring a large number of repeats) that appears to copurify with a lot of other proteins after Ni-affinity chromatography and gel-filtration. We have tried adjusting the ionic strength of these runs and have gone to as high as 5M

Re: [ccp4bb] off topic: problematic protein

2011-04-19 Thread Arthur Glasfeld
I recently followed a protocol from Stephen Sligar's lab for the purification of his nanodisc protein, which has strong hydrophobic character as it associates with phospholipids. His protocol includes washes with 1% Triton X-100 and then with 50 mM cholate (both at pH 8 in the presence of 300

Re: [ccp4bb] off topic: problematic protein

2011-04-19 Thread Kendall Nettles
HI Savvas, We recently had a protein that showed two overlapping peaks on the disposable fast flow Q columns, so we decided to see if we could resolve them with a higher resolution Q media. It ended up having 7 distinct peaks, only one of which was free of contaminants. We have also noticed