Re: [ccp4bb] pyMol--set up view through one axis of the unit cell

2010-09-07 Thread Jason Vertrees
Hi Jerry, If you wanted the mathematically exact axis, you _should_ be able to just make two pseudoatoms, position them at the proper position at the end of your axis and then use the orient command: pseudoatom axisMin, pos=[x1, y1, z1] pseudoatom axisMax, pos=[x2, y2, z2] orient axis* But, ther

Re: [ccp4bb] pyMol--set up view through one axis of the unit cell

2010-09-07 Thread Sampson, Jared
Hi Jerry, If your protein has an NCS symmetry axis parallel to a cell edge, you can try using the “orient” command. http://www.pymolwiki.org/index.php/Orient Best, Jared On 9/3/10 7:31 PM, "James Stroud" wrote: On Sep 3, 2010, at 4:03 PM, Jerry McCully wrote: It is a Pymol question. How

Re: [ccp4bb] pyMol--set up view through one axis of the unit cell

2010-09-03 Thread James Stroud
On Sep 3, 2010, at 4:03 PM, Jerry McCully wrote: It is a Pymol question. How can I set up the view through one axis of the unit cell? By eye. Use orthoscopic view to help. Show the unit cell as a guide: http://www.pymolwiki.org/index.php/Cell James

[ccp4bb] pyMol--set up view through one axis of the unit cell

2010-09-03 Thread Jerry McCully
Dear All, It is a Pymol question. How can I set up the view through one axis of the unit cell? Thanks a lot and have a nice weekend, Jerry