[ccp4bb] residues forming the surface of a cavity

2012-10-04 Thread sreetama das
Dear all,   Is there any CCP4 module/ other software/ web server which can determine which particular residues form the surface of a pocket/ binding-site in a protein? Thanks in advance, sreetama

Re: [ccp4bb] residues forming the surface of a cavity

2012-10-04 Thread Francois Berenger
On 10/04/2012 04:09 PM, sreetama das wrote: Dear all, Is there any CCP4 module/ other software/ web server which can determine which particular residues form the surface of a pocket/ binding-site in a protein? Do you mean "residues not far from any ligand atom"? And you know wher

Re: [ccp4bb] residues forming the surface of a cavity

2012-10-04 Thread eugene . krissinel
Try PISA -- Eugene On 4 Oct 2012, at 08:09, sreetama das wrote: Dear all, Is there any CCP4 module/ other software/ web server which can determine which particular residues form the surface of a pocket/ binding-site in a protein? Thanks in advance, sreetama -- Scanned by iCr

Re: [ccp4bb] residues forming the surface of a cavity

2012-10-04 Thread Manas Sule
You can also try the CASTP server On Thu, Oct 4, 2012 at 2:47 PM, wrote: > Try PISA > > -- Eugene > > On 4 Oct 2012, at 08:09, sreetama das wrote: > > Dear all, > Is there any CCP4 module/ other software/ web server which > can determine which particular residues form the sur

Re: [ccp4bb] residues forming the surface of a cavity

2012-10-10 Thread sreetama das
idues forming the surface of a cavity On 10/04/2012 04:09 PM, sreetama das wrote: > Dear all, >                Is there any CCP4 module/ other software/ web server > which can determine which particular residues form the surface of a > pocket/ binding-site in a protein? Do you mean