Dear all,
Is there any CCP4 module/ other software/ web server which can
determine which particular residues form the surface of a pocket/ binding-site
in a protein?
Thanks in advance,
sreetama
On 10/04/2012 04:09 PM, sreetama das wrote:
Dear all,
Is there any CCP4 module/ other software/ web server
which can determine which particular residues form the surface of a
pocket/ binding-site in a protein?
Do you mean "residues not far from any ligand atom"?
And you know wher
Try PISA
-- Eugene
On 4 Oct 2012, at 08:09, sreetama das wrote:
Dear all,
Is there any CCP4 module/ other software/ web server which can
determine which particular residues form the surface of a pocket/ binding-site
in a protein?
Thanks in advance,
sreetama
--
Scanned by iCr
You can also try the CASTP server
On Thu, Oct 4, 2012 at 2:47 PM, wrote:
> Try PISA
>
> -- Eugene
>
> On 4 Oct 2012, at 08:09, sreetama das wrote:
>
> Dear all,
> Is there any CCP4 module/ other software/ web server which
> can determine which particular residues form the sur
idues forming the surface of a cavity
On 10/04/2012 04:09 PM, sreetama das wrote:
> Dear all,
> Is there any CCP4 module/ other software/ web server
> which can determine which particular residues form the surface of a
> pocket/ binding-site in a protein?
Do you mean