On Jan 24, 2012, at 4:00 PM, Ed Pozharski wrote:
I am looking for a program/server that would determine secondary
structure from a pdb file and then output a new pdb file with
HELIX/SHEET records. I have a model for which pymol fails to produce
correct secondary structure. DSSP and STRIDE iden
This reminds me of stride2pdb in case you want to use more than pymol with your
secondary structure assignments:
http://structure.usc.edu/stride2pdb/
James
On Jan 24, 2012, at 2:20 PM, Martin Hällberg wrote:
> You can try STRIDE2PyMOL:
>
> http://pldserver1.biochem.queensu.ca/~rlc/work/pymol
You can try STRIDE2PyMOL:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/stride_ss.py
/Martin
On Jan 24, 2012, at 9:57 PM, Ed Pozharski wrote:
> I am looking for a program/server that would determine secondary
> structure from a pdb file and then output a new pdb file with
> HELIX/SHEET r
Try DSSP2PDB.
http://structure.usc.edu/dssp2pdb/
It's a perl script.
Crossover flame note: I spent a lot of time learning perl and I still don't
recommend the language ;-)
James
On Jan 24, 2012, at 1:57 PM, Ed Pozharski wrote:
> I am looking for a program/server that would determine second
I am looking for a program/server that would determine secondary
structure from a pdb file and then output a new pdb file with
HELIX/SHEET records. I have a model for which pymol fails to produce
correct secondary structure. DSSP and STRIDE identify the secondary
structure correctly but I'd need
