Re: [ccp4bb] Troubleshooting protein purification cation IEX

2008-09-23 Thread Raji Edayathumangalam
Hi, Many things can lead to your observation. Please outline all steps of your purification procedure as it is not clear what is done before and after the Ion Exchange steps. I am not sure if IEF in your emails refers to Isoelectric focusing, as the acronym is usually used?? Couple of s

Re: [ccp4bb] Troubleshooting protein purification cation IEX

2008-09-23 Thread artem
Hello Meg, Since your protein is quite acidic, your next step could be e.g. anion exchange - provided that you are able to get the protein into a suitable buffer w/o losing it (since you will pass through the pI). If you can, the simplest way to do so is to add TRIS to the pH4.5 buffer until you g

Re: [ccp4bb] Troubleshooting protein purification cation IEX

2008-09-23 Thread R.M. Garavito
Meg, I might add that if you have boiled your samples, you might disregard this: 1) Instead of contamination, you might just be seeing multiple bands due to 'aggregation' of your protein! Make sure you boil the sample prior to loading on gel and also that your loading dye contains SDS,

Re: [ccp4bb] Troubleshooting protein purification cation IEX

2008-09-23 Thread Juergen Bosch
Another suggestion that comes to mind is crosslinking via Cys, are you purifying under reducing conditions ? Or since you have inclusion bodies they're in general not correctly folded hence expose hydrophobic regions and can interact with other proteins, to avoid unspecific interaction add

Re: [ccp4bb] Troubleshooting protein purification cation IEX

2008-09-23 Thread Chun Luo
Another option is to purify in denatured condition, then refold. --Chun -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Meg Sent: Tuesday, September 23, 2008 12:51 AM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Troubleshooting protein purification cation