Re: [Cdk-user] CDK/JRI (Java/R Interface) license incompatibility?

2010-01-12 Thread Moses Hohman
FWIW the JRI author became friendlier (my fault for calling it too early there), and is of the personal opinion that because he compiles to R's API only, and because the R API is released under the LGPL (although I don't know where that's documented), he legitimately uses LGPL. If you actually use

Re: [Cdk-user] CDK/JRI (Java/R Interface) license incompatibility?

2010-01-12 Thread Rajarshi Guha
On Wed, Jan 13, 2010 at 1:39 AM, Egon Willighagen wrote: > On Wed, Jan 13, 2010 at 7:08 AM, Rajarshi Guha > wrote: >> IMO, I would suggest dropping the JRI/R code completely in master - >> it's significantly out of date and the latest JRI will require >> significant refactoring of CDK code. Also

Re: [Cdk-user] CDK/JRI (Java/R Interface) license incompatibility?

2010-01-12 Thread Egon Willighagen
On Wed, Jan 13, 2010 at 7:08 AM, Rajarshi Guha wrote: > IMO, I would suggest dropping the JRI/R code completely in master - > it's significantly out of date and the latest JRI will require > significant refactoring of CDK code. Also I don't think anybody has > actually used this code (it's not rea

Re: [Cdk-user] CDK/JRI (Java/R Interface) license incompatibility?

2010-01-12 Thread Rajarshi Guha
IMO, I would suggest dropping the JRI/R code completely in master - it's significantly out of date and the latest JRI will require significant refactoring of CDK code. Also I don't think anybody has actually used this code (it's not really cheminformatics specific) On Tue, Jan 12, 2010 at 8:13 PM,

[Cdk-user] CDK/JRI (Java/R Interface) license incompatibility?

2010-01-12 Thread Moses Hohman
Hi everyone, Just a heads up (and apologies if I'm confused): I noticed today that CDK uses JRI (the Java/R Interface), which claims that it's LGPL, but I think actually should be GPL (and hence incompatible with CDK's license) because it links to R (which is GPL). Do I have that wrong? I attempt

Re: [Cdk-user] CDK descriptors list

2010-01-12 Thread Rajarshi Guha
On Tue, Jan 12, 2010 at 4:15 PM, Vincent Le Guilloux wrote: > The problem is actually the java.class.path property. This property > does not actually contains the full classpath, but only the classpath > as defined at the application startup. This results, in my case, in a > single jar file explor

Re: [Cdk-user] Issues while importing CDK classes

2010-01-12 Thread Egon Willighagen
Hi Yannick, On Mon, Jan 11, 2010 at 11:29 PM, Yannick Djoumbou wrote: > I have tried to import different classes such as the EStateFingerprint class > from org/openscience/cdk/fingerprint (after I added the absolute path > (/home/**/lib/cdk/cdk-fingerprint.jar to fingerprint.jar to my CLASSPA

[Cdk-user] CDK descriptors list

2010-01-12 Thread Vincent Le Guilloux
Dear CDKers, I would like to point a little issue concerning CDK descriptors calculation. In my application, the user has the possibility to calculate one, several or all CDK descriptors using a checking tree. To build this tree, I have to get all descriptors classes, and corresponding des