Re: [Cdk-user] atom to atom mapping for reactions

2022-10-20 Thread John Mayfield
Depends on the data, journal reactions are more esoteric. People like to try and eval/test atom mapping with hard/rare reactions. Common reaction mechanisms used day-to-day are common because they're useful building blocks :-). Something I always thought it (IBM RxnMapper) would benefit from is so

Re: [Cdk-user] atom to atom mapping for reactions

2022-10-20 Thread Uli Fechner
Okay, thank you. We do use RXNMapper and in our experience the numbers they state in their publication are a bit optimistic... On Thu, Oct 20, 2022 at 7:25 PM John Mayfield wrote: > It does not, personally today I would use the IBM AI based one. > > On Thu, 20 Oct 2022 at 07:05, Uli Fechner w

Re: [Cdk-user] atom to atom mapping for reactions

2022-10-20 Thread John Mayfield
It does not, personally today I would use the IBM AI based one. On Thu, 20 Oct 2022 at 07:05, Uli Fechner wrote: > Hi, > > I vaguely remember that there is/was code in the CDK for atom-to-atom > mapping of reactions (wasn't that RDTool?). However, I cannot find that now. > > RDTool by Asad uses

[Cdk-user] atom to atom mapping for reactions

2022-10-19 Thread Uli Fechner
Hi, I vaguely remember that there is/was code in the CDK for atom-to-atom mapping of reactions (wasn't that RDTool?). However, I cannot find that now. RDTool by Asad uses CDK. But its maintenance seems to be lacking a bit (last pre-release based on CDK 2.5 is back from Mar 2021). Does CDK provid