Re: [CF-metadata] is molecular oxygen in seawater always dissolved?

2013-05-18 Thread Lowry, Roy K.
Hi John, In 30 years in oceanography I've never heard any mention of any doubt that it is, at least as far as the usual measurement techniques in oceanogrphy are concerned (polarographic electrodes, Winkler titration and optodes). The labelling 'dissolved' originated in community usage - it's

Re: [CF-metadata] is molecular oxygen in seawater always dissolved?

2013-05-18 Thread Lowry, Roy K.
Hello Philip, Was that measured (John's area of concern) or a parameter in a numerical simulation? Cheers, Roy. From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Cameron-smith, Philip [cameronsmi...@llnl.gov] Sent: 18 May 2013 10:12 To:

Re: [CF-metadata] standard_name for acoustic travel time from echo sounder

2013-05-30 Thread Lowry, Roy K.
Dear All, Of Matthias's suggestions I have a strong preference for a slight extension of roundtrip_acoustic_travel_time_in_sea_water, namely acoustic_signal_roundtrip_travel_time_in_sea_water. 'two-way' is a possible alternative to 'roundtrip' but I think the former carries unfortunate

Re: [CF-metadata] standard_name for acoustic travel time from echo sounder

2013-05-30 Thread Lowry, Roy K.
...@marinemetadata.org] Sent: 30 May 2013 15:22 To: Lowry, Roy K. Cc: mlankho...@ucsd.edu; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] standard_name for acoustic travel time from echo sounder +1 for Roy's choice. Can you explain the following for the acoustically naive? I assume the data

Re: [CF-metadata] new standard name for primary productivity of carbon per unit volume

2013-06-05 Thread Lowry, Roy K.
Hi John, I think if you look at the various molar primary productivity standard names you'll see that the decision has been made in the past to define 'productivity' as 'production per unit area'. It might be less confusing if you used net_primary_production_of_carbon_per_unit_volume It

Re: [CF-metadata] new standard name for primary productivity of carbon per unit volume

2013-06-05 Thread Lowry, Roy K.
follows an existing CF pattern)? Best wishes, Philip On Jun 5, 2013, at 07:54, Lowry, Roy K. r...@bodc.ac.uk wrote: Hi John, I think if you look at the various molar primary productivity standard names you'll see that the decision has been made in the past to define 'productivity

Re: [CF-metadata] new standard name: land_surface_skin_temperature

2013-06-14 Thread Lowry, Roy K.
'. This should surely read 'and not the skin temperature, whose standard name is sea_surface_skin_temperature'. Apologies, Roy. From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K. [r...@bodc.ac.uk] Sent: 14 June 2013 13:39 To: Jonathan

Re: [CF-metadata] standard_name_vocabulary attribute

2013-06-14 Thread Lowry, Roy K.
-metadata/attachments/20130613/2313776c/attachment-0001.html -- Message: 3 Date: Thu, 13 Jun 2013 14:50:04 +0100 From: Lowry, Roy K. r...@bodc.ac.ukmailto:r...@bodc.ac.uk To: Ajay Krishnan - NOAA Affiliate ajay.krish...@noaa.govmailto:ajay.krish...@noaa.gov, cf

Re: [CF-metadata] new standard name: land_surface_skin_temperature

2013-06-20 Thread Lowry, Roy K.
Hello Karl, There have been extensive debates in the observational oceanographic community on the concept of 'sea surface temperature' - much of it on this list led by Craig Donlan - that resulted in the addition of sea_surface_foundation_temperature, sea_surface_skin_temperature and

Re: [CF-metadata] request #1 for names: mole concentrations and mass fractions, similar to current names

2013-09-13 Thread Lowry, Roy K.
Hi John, Couple of points: Biogenic silica isn't simply silicon dioxide - it's the hydrated amorphous form commonly known as opal. How about replacing 'silicon dioxide' by 'hydrated silicon dioxide (opal)'? I find 'moles_of_nitrogen_per_unit_mass_in_sea_water' ambiguous. Do you mean

Re: [CF-metadata] standard names for sediment trap data

2013-10-11 Thread Lowry, Roy K.
Hi John, I totally agree we need to standardise of the phrasing and would vote for sticking with 'sinking_mass/mole_flux as it's established. Cheers, Roy. From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] On Behalf Of John Graybeal

Re: [CF-metadata] standard names for sediment trap data

2013-10-11 Thread Lowry, Roy K.
Dear Matthias, I don't think it's down to CF to specify whether mole or mass fluxes are used. The existing mole fluxes were set up to support modelling, but every sediment trapper I've ever encountered uses mass fluxes. Both need supporting through Standard Names. Cheers, Roy.

Re: [CF-metadata] standard names for sediment trap data

2013-10-11 Thread Lowry, Roy K.
Hello Maureen, Been a while since BOFS! A systematic approach attempting to cover all bases isn't the established CF Standard Name management approach - it's a much more responsive way of doing things. I'm also a little unclear about some of your proposals. For example, consider

Re: [CF-metadata] standard names for sediment trap data

2013-10-11 Thread Lowry, Roy K.
Dear All, Downward motion relative to a fixed reference frame in the wet stuff would be described as a vertical current. However, I totally agree that we need to differentiate between downward fluxes - used for fluxes of electromagnetic radiation - from fluxes of particles descending through

Re: [CF-metadata] standard names for sediment trap data

2013-10-11 Thread Lowry, Roy K.
. From: Maureen Conte [mco...@mbl.edu] Sent: 11 October 2013 17:41 To: Lowry, Roy K. Cc: Thomas Trull; cf-metadata@cgd.ucar.edu; OceanSITES Data Management Team; mlankhorst Subject: Re: standard names for sediment trap data Hi all- Nice to hear from you Roy! Technically

Re: [CF-metadata] standard names for sediment trap data

2013-10-13 Thread Lowry, Roy K.
Hello Jonathan, One change I would recommend is to change composition terms such as 'composition_ratio_of_silicon_30_to_silicon_28_in_sinking_flux' to 'composition_ratio_of_silicon_30_to_silicon_28_in_suspended_matter'. The reason for this is that the particles in the water can be collected in

Re: [CF-metadata] standard names for sediment trap data

2013-10-14 Thread Lowry, Roy K.
: Thomas Trull [tom.tr...@utas.edu.au] Sent: 14 October 2013 08:39 To: Lowry, Roy K.; Maureen Conte Cc: cf-metadata@cgd.ucar.edu; mlankhorst Subject: RE: standard names for sediment trap data So, perhaps, the first part of the name could be ‘sediment_trap’? Allowing: sediment_trap_sinking_flux_

Re: [CF-metadata] new standard name for primary production of carbon per unit volume

2013-11-04 Thread Lowry, Roy K.
Hi John, Production per unit volume is the usual parameter measured in the oceans. What is usually done is to measure this at maybe half a dozen depths at a given position between the surface and 100m and then there is an integration procedure that can be done on this dataset to produce a

Re: [CF-metadata] new standard name for primary production of carbon per unit volume

2013-11-05 Thread Lowry, Roy K.
Data CentreEmail: alison.pamm...@stfc.ac.uk STFC Rutherford Appleton Laboratory R25, 2.22 Harwell Oxford, Didcot, OX11 0QX, U.K. -Original Message- From: John Graybeal [mailto:john.grayb...@marinexplore.com] Sent: 04 November 2013 22:54 To: Lowry, Roy K. Cc: Pamment, Alison (STFC

Re: [CF-metadata] featureType attribute (was CF-1.6 DSG clarification: time series lat/lon coordinates)

2013-12-03 Thread Lowry, Roy K.
Hi Nan, In my view to be CF1.6 compliant you need to follow John's data structure specification. The OceanSites structure in which the data are manipulated by averaging/interpolation to fit the structure you describe may be CF1.5-compliant, but not CF1.6 compliant as the conventions currently

Re: [CF-metadata] standard names for sediment trap data

2013-12-06 Thread Lowry, Roy K.
- biogenic_silica - lithogenic_silica - calcium - titanium - manganese - barium - magnesium Respectfully, Matthias On Monday, October 14, 2013 04:15:11 am Lowry, Roy K. wrote: Hello Thomas, It is indeed an established principle that Standard Names identify the geophysical phenomenon and not how

Re: [CF-metadata] standard names for sediment trap data

2013-12-06 Thread Lowry, Roy K.
Hello Jonathan, The problem is that these terms come from different communities, where they are in common usage. How do we decide which communities usage to adopt? Maybe sticking with the geochemists (who instinctively know what 'total iron' means) and being explicit with the biogeochemistry

Re: [CF-metadata] standard names for sediment trap data

2013-12-07 Thread Lowry, Roy K.
Hello again, Thinking about it over night (I'm currently in San Diego), I think a way forward might be to use the word 'total' in all cases, but define is as 'in every form', which provides a common denominator between these two usages. Cheers, Roy

Re: [CF-metadata] standard names for sediment trap data

2013-12-09 Thread Lowry, Roy K.
Dear All, My reason for including 'total' in these cases is because I've seen it used in that way by communities handling those particular parameters. Question is whether we follow CF past practice or established usage outside CF. I would prefer to follow community practice, but don't see

Re: [CF-metadata] Standard Name Inconsistency?

2013-12-18 Thread Lowry, Roy K.
. From: CF-metadata [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K. Sent: 18 December 2013 09:03 To: cf-metadata@cgd.ucar.edumailto:cf-metadata@cgd.ucar.edu Subject: [CF-metadata] Standard Name Inconsistency? Dear All, During an analysis I've just done I've noticed

Re: [CF-metadata] Ocean colour standard names

2013-12-18 Thread Lowry, Roy K.
Hi Alison, From an oceanographic biogeochemist's perspective (and hence not applicable to atmospheric Standard Names which do include particulate_organic_matter) particulate_organic_matter is the material trapped on a filter after a seawater sample has been filtered and the inorganic carbon

[CF-metadata] FW: SeaDataNet and ADCP data

2014-03-19 Thread Lowry, Roy K.
Second attempt - first seems to have got stuck From: Lowry, Roy K. Sent: 18 March 2014 21:11 To: cf-metadata@cgd.ucar.edu Cc: gilbert.maud...@ifremer.fr Subject: SeaDataNet and ADCP data Dear All (especially John Caron), We're currently extending

[CF-metadata] FW: [sdn2-netcdf] Extensions to cover ADCP data

2014-03-27 Thread Lowry, Roy K.
Original Message Subject: [sdn2-netcdf] Extensions to cover ADCP data Date: Mon, 24 Mar 2014 08:33:45 + From: Lowry, Roy K. r...@bodc.ac.uk Reply-To: sdn2-net...@listes.seadatanet.org To: sdn2-net...@listes.seadatanet.org sdn2-net...@listes.seadatanet.org CC: gilbert.maud

Re: [CF-metadata] Where does the CF standard name list live now?

2014-04-16 Thread Lowry, Roy K.
Dear All, Alternatively it may be accessed through: Human-readable: http://seadatanet.maris2.nl/v_bodc_vocab_v2/search.asp?lib=P07 Just press 'Search' to get a full listing RDF-XML: http://vocab.nerc.ac.uk/collection/P07 (all terms including deprecates)

Re: [CF-metadata] [CF Metadata] #99: Taxon Names and Identifiers

2014-04-23 Thread Lowry, Roy K.
Dear John and Jonathan, Resurrecting Trac ticket 99 has been on my Todo list for some time - thanks John. I'm not in the office until Tuesday and my Trac login credentials are on my work PC. Hence this reply via the normal list. Since the last correspondence on this ticket, SeaDataNet have

Re: [CF-metadata] UDUNITS error

2014-05-27 Thread Lowry, Roy K.
. Please note that I now work part-time from Tuesday to Thursday. E-mail response on other days is possible but not guaranteed! From: John Graybeal [mailto:jbgrayb...@mindspring.com] Sent: 27 May 2014 00:12 To: Lowry, Roy K.; CF Metadata List Cc: michele.fich...@ifremer.fr Subject: Re: [CF

Re: [CF-metadata] UDUNITS error

2014-05-27 Thread Lowry, Roy K.
Many thanks Steven. Please note that I now work part-time from Tuesday to Thursday. E-mail response on other days is possible but not guaranteed! From: Steven Emmerson [mailto:emmer...@ucar.edu] Sent: 27 May 2014 00:54 To: John Graybeal Cc: Lowry, Roy K.; CF Metadata List; michele.fich

Re: [CF-metadata] new standard names : tidal quantities tidal_high_water, ...

2014-06-04 Thread Lowry, Roy K.
Hello Guenther, There is a lot here and so far I have just had time to look at your first proposed Standard Name. What I don't understand is the time context of your data. There are two high tides per day (or even four in places like the Solent), each of which has a different high water

Re: [CF-metadata] request for large number of new variable names

2014-06-28 Thread Lowry, Roy K.
Hi Nan, You might also like to consider the searchable interface at: http://seadatanet.maris2.nl/v_bodc_vocab_v2/search.asp?lib=P07 Something even more powerful is currently under development between BODC and partners in the US. Cheers, Roy. From: Nan

[CF-metadata] Atmospheric Physics Discovery

2014-07-02 Thread Lowry, Roy K.
Dear All, Two simple questions that have arisen from the need for atmospheric physics data discovery in SeaDataNet. 1) Would a typical atmospheric physicist searching for sound velocity in air data be happy to receive hits from data sets containing air density, but not sound velocity per

Re: [CF-metadata] Standard Name table missing from the website?

2014-07-12 Thread Lowry, Roy K.
Hi John, I'd be very concerned if the Standard Names versioning weren't decoupled from the versioning of the Conventions as the publication frequency requirements differ somewhat. If people are being blocked by the current web site transition issues then the latest version of Standard Names

Re: [CF-metadata] vertical dimension for subseafloor measurements

2014-09-02 Thread Lowry, Roy K.
I also totally agree with depth_below_sea_floor. Cheers, Roy. Please note that I now work part-time from Tuesday to Thursday. E-mail response on other days is possible but not guaranteed! -Original Message- From: Jonathan Gregory [mailto:j.m.greg...@reading.ac.uk] Sent: 01 September

[CF-metadata] SeaDataNet and ADCP data

2014-11-07 Thread Lowry, Roy K.
Dear All (especially John Caron), We're currently extending the SeaDataNet NetCDF standard - a profile of CF1.6 - to cover vessel-mounted ADCP and other profileTrajectory data (e.g. towed thermistor chains). Two issues have arisen. 1) For a ship, VMADCP have profiles of current parameters for

Re: [CF-metadata] SeaDataNet and ADCP data

2014-11-11 Thread Lowry, Roy K.
Don't know where this suddenly came from - I sent it on March 18! It's content is somewhat out of date. From: Lowry, Roy K. [r...@bodc.ac.uk] Sent: 18 March 2014 21:11 To: cf-metadata@cgd.ucar.edu Cc: gilbert.maud...@ifremer.fr Subject: [CF-metadata

Re: [CF-metadata] Standard Names for: Ocean Kinetic Energy and Relative Vorticity

2014-11-27 Thread Lowry, Roy K.
Dear Jonathan, A minor point - should be distance_from_geocenter as established practice is to use US spellings. Cheers, Roy. From: Jonathan Gregory [j.m.greg...@reading.ac.uk] Sent: 27 November 2014 14:17 To: cf-metadata@cgd.ucar.edu Subject: Re:

Re: [CF-metadata] New UDUnits units for information: byte and octet

2014-11-27 Thread Lowry, Roy K.
Hi Steve, Fresh from sorting the fallout from units of 'mg N/l' in Europe I'm with you all the way. To me a photon isn't a unit. A mole (which used to be called an Einstein for photons), or a dimensionless count then OK. Cheers, Roy. From: Steve

Re: [CF-metadata] Standard names for isotopic ratios ?

2014-12-15 Thread Lowry, Roy K.
Hello Armin, enrichment_of_13C_in_carbon_dioxide_in_air_with_respect_to_vienna_peedee_belemnite I have been using the phrase 'enrichment of 13C' in parameter controlled vocabularies for 'delta-13C' which is subtly different from a simple isotopic difference. From your usage of 'per mil' it

Re: [CF-metadata] Fwd: Re: Request for new standard-name: apparent_oxygen_utilization

2015-01-20 Thread Lowry, Roy K.
Hi Nan, I must admit a little discomfort watching the process of CF semantic modelling replacing a well-known term with something that nobody in the domain would recognise without significant education. I didn't comment because I as a semantic modeller I can see both sides. However, I think

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-02-12 Thread Lowry, Roy K.
standard name is lagrangian_tendency_of_air_pressure, which answers the question, What is omega?, rather than being the customary jargon term. Best wishes Jonathan On Jan 20, 2015, at 10:50, Lowry, Roy K. r...@bodc.ac.uk wrote: Hi Nan, I must admit a little discomfort

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-03-09 Thread Lowry, Roy K.
Works for me. Cheers, Roy. From: Ajay Krishnan - NOAA Affiliate [ajay.krish...@noaa.gov] Sent: 09 March 2015 19:43 To: John Graybeal Cc: Lowry, Roy K.; CF Metadata List Subject: Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

Re: [CF-metadata] Using a standard_name more than once in a file

2015-03-30 Thread Lowry, Roy K.
Hello Evan, Opinion on this is divided - some communities have decided to regard the Standard Name as mandatory. The CF Conventions state that the Standard Name may be omitted providing that the Long Name is supplied. In my view (automated data aggregation) in your case I would use the Long

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-03-03 Thread Lowry, Roy K.
March 2015 16:11 To: Lowry, Roy K. Cc: Ajay Krishnan - NOAA Affiliate; alison.pamm...@stfc.ac.uk; cf-metadata@cgd.ucar.edu; Tim Boyer - NOAA Federal Subject: Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization Hello, Let me make the following suggestion for consideration

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-03-03 Thread Lowry, Roy K.
, Lamont-Doherty Earth Observatory, Palisades, N. Y. Are you happier with that? Cheers, Roy. From: Hernan Garcia - NOAA Federal [mailto:hernan.gar...@noaa.gov] Sent: 03 March 2015 16:37 To: Lowry, Roy K. Cc: Ajay Krishnan - NOAA Affiliate; alison.pamm...@stfc.ac.uk; cf-metadata@cgd.ucar.edu; Tim

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-02-27 Thread Lowry, Roy K.
being accepted!!! Cheers, Roy. From: Ajay Krishnan - NOAA Affiliate [ajay.krish...@noaa.gov] Sent: 27 February 2015 16:32 To: Lowry, Roy K.; Hernan Garcia - NOAA Federal Cc: alison.pamm...@stfc.ac.uk; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Request

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-02-27 Thread Lowry, Roy K.
Hello Alison, Looks good to me. Cheers, Roy. From: alison.pamm...@stfc.ac.uk [alison.pamm...@stfc.ac.uk] Sent: 26 February 2015 18:11 To: Lowry, Roy K.; ajay.krish...@noaa.gov; cf-metadata@cgd.ucar.edu Subject: RE: [CF-metadata] Request for new standard

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-02-27 Thread Lowry, Roy K.
: alison.pamm...@stfc.ac.ukmailto:j.a.pamm...@rl.ac.uk STFC Rutherford Appleton Laboratory R25, 2.22 Harwell Oxford, Didcot, OX11 0QX, U.K. From: CF-metadata [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of Lowry, Roy K. Sent: 26 February 2015 15:29 To: Ajay Krishnan - NOAA Affiliate; cf

Re: [CF-metadata] Request for new standard-name: apparent_oxygen_utilization

2015-02-26 Thread Lowry, Roy K.
Hi Alison, Just to clarify that I am in total agreement with this and had a bit of a senior moment in a previous message. Cheers, Roy. From: Ajay Krishnan - NOAA Affiliate [ajay.krish...@noaa.gov] Sent: 26 February 2015 14:56 To: cf-metadata@cgd.ucar.edu

Re: [CF-metadata] Standardized Region Names

2015-04-24 Thread Lowry, Roy K.
Hi Ros and Alison, The standardised region names are held in the NERC Vocabulary server. An RDF-XML version may be obtained using: http://vocab.nerc.ac.uk/collection/P30/current/accepted You can also use this to check the validity of a particular area name, For example to verify 'antarctica'

[CF-metadata] FW: Salinity units

2015-06-03 Thread Lowry, Roy K.
Pawlowicz [mailto:rpawlow...@eos.ubc.ca] Sent: 03 June 2015 00:26 To: Lowry, Roy K. Subject: Re: [CF-metadata] Salinity units Roy - I have to confess I am not entirely sure of the ramifications of making changes or how units are modified (by powers of 10, for example) in the CF system. I would

Re: [CF-metadata] FW: Salinity units

2015-06-03 Thread Lowry, Roy K.
Hi Craig, Supports having the units for sea surface salinity as 0.001. I certainly don't want sea surface salinity to default to Practical Salinity. Cheers, Roy. -Original Message- From: Craig Donlon [mailto:craig.don...@esa.int] Sent: 03 June 2015 08:19 To: Lowry, Roy K. Cc: cf

Re: [CF-metadata] FW: Salinity units

2015-06-03 Thread Lowry, Roy K.
://www.metoffice.gov.uk/climate -Original Message- From: CF-metadata [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of John Helly Sent: 03 June 2015 08:51 To: Lowry, Roy K.; GODAE craig.don...@esa.intmailto:craig.don...@esa.int Cc: cf-metadata@cgd.ucar.edumailto:cf-metadata

Re: [CF-metadata] Practical Salinity units

2015-06-15 Thread Lowry, Roy K.
Hi Nan, 'Determination'? - 'Estimate' sounds lik a guess to me. Cheers, Roy. From: CF-metadata [cf-metadata-boun...@cgd.ucar.edu] on behalf of Nan Galbraith [ngalbra...@whoi.edu] Sent: 15 June 2015 17:49 To: Signell, Richard Cc: cf-metadata@cgd.ucar.edu;

Re: [CF-metadata] Salinity units

2015-06-02 Thread Lowry, Roy K.
- but, of course, we'd mostly rather remain CF- compliant. Thanks for any feedback on this. Cheers - Nan On 6/17/09 2:48 AM, Lowry, Roy K wrote: Dear All, During an exercise with Alison mapping the CF Standard Names to a units vocabulary in the BODC vocabulary server I noticed

Re: [CF-metadata] Salinity units

2015-05-22 Thread Lowry, Roy K.
...@usgs.gov] Sent: 22 May 2015 20:01 To: Lowry, Roy K. Cc: Reyna Jenkyns; cf-metadata@cgd.ucar.edu; OceanSITES Data Management Team; Nan Galbraith; Richard Pawlowicz Subject: Re: [CF-metadata] Salinity units Roy, For sure dimensionless. But 1.0, 0.001 or g/kg? The latest version (27) of the CF

Re: [CF-metadata] Salinity units

2015-05-22 Thread Lowry, Roy K.
' as an indication that salinity does not have units - but, of course, we'd mostly rather remain CF-compliant. Thanks for any feedback on this. Cheers - Nan On 6/17/09 2:48 AM, Lowry, Roy K wrote: Dear All, During an exercise with Alison mapping the CF Standard Names to a units vocabulary

Re: [CF-metadata] [NetCDF.swg] OGC NetCDF SWG DIscussions

2015-10-22 Thread Lowry, Roy K.
Thanks Adam, Request noted. I'm not sure if Alexandra is on the CF list, but I've forwarded your e-mail to her to be sure something gets done. Cheers, Roy. From: CF-metadata on behalf of Adam Leadbetter

Re: [CF-metadata] standard names and vertical coordinate for bed stratigraphy / sediment layers

2015-11-01 Thread Lowry, Roy K.
Dear Bert, In Geo-Seas project we took a different, and in my view simpler, approach to specifying the z co-ordinates of a sediment layer. This was to have two co-ordinate variables named, in the P01 vocabulary: Minimum depth below surface of the bed Maximum depth below surface of the bed

Re: [CF-metadata] Wave Direction, Energy and Steepness Sub-Proposal

2016-06-14 Thread Lowry, Roy K.
ave a depth associated with it. Do we need to include a description of how this term is used in waves, as part of these definitions? Thanks! Nan On 6/1/16 9:06 AM, Lowry, Roy K. wrote: > Dear All, > Please find the third part of the wave Standard Name proposal. This > includes changes to the

[CF-metadata] FW: Wave Direction, Energy and Steepness Sub-Proposal

2016-06-15 Thread Lowry, Roy K.
Forget to use 'Reply All'. From: Lowry, Roy K. Sent: 15 June 2016 08:05 To: ngalbra...@whoi.edu Subject: Re: [CF-metadata] Wave Direction, Energy and Steepness Sub-Proposal Hi Nan, I thoroughly understand what you are proposing and that the proposed names are not affected. Your

[CF-metadata] Wave Direction, Energy and Steepness Sub-Proposal

2016-06-01 Thread Lowry, Roy K.
Dear All, Please find the third part of the wave Standard Name proposal. This includes changes to the definition for five of the six existing wave direction Standard names plus five new Standard names. Based on the proposal of Elodie and Marta with further off-list discussion by Chris Barker,

Re: [CF-metadata] Waves

2016-06-22 Thread Lowry, Roy K.
Many thanks Alison, I'm perfectly happy with your suggested change of 'average' to 'mean' in the proposed height Standard Names. Cheers, Roy. From: CF-metadata [mailto:cf-metadata-boun...@cgd.ucar.edu] On Behalf Of alison.pamm...@stfc.ac.uk Sent: 22 June 2016 14:32 To:

Re: [CF-metadata] temporally / spatially variable metadata in NetCDF-CF

2016-02-08 Thread Lowry, Roy K.
Hello Markus, In the SeaDataNet profile of CF 1.6 documented in http://www.seadatanet.org/content/download/16251/106283/file/SDN2_D85_WP8_Datafile_formats.pdf we have addressed this issue by adopting the INSTANCE dimension from the CF 1.6 manual set to the number of timeseries packed into the

Re: [CF-metadata] vertical coordinate for bed stratigraphy / sediment layers

2016-02-24 Thread Lowry, Roy K.
Dear All, Bert is raising an interesting issue which is a result of the historical extension of CF from atmospheric science, through oceanography and now into geology. What we're talking about is a reference plane that is synonymous to 'surface' for the base of the atmosphere, but instead

Re: [CF-metadata] vertical coordinate for bed stratigraphy / sediment layers

2016-02-29 Thread Lowry, Roy K.
observations. The use of soil in the standard name > table seems to be consistent with this use. Any objections against this name? > > Best regards, > > Bert > > -Original Message- > From: Reyna Jenkyns [mailto:re...@uvic.ca] > Sent: 24 February 2016 1

Re: [CF-metadata] standard names for sediment trap data

2016-03-10 Thread Lowry, Roy K.
> > > total_carbon (=organic+inorganic in its definition) and total_nitrogen > > > in names 5 and 8 > > > > > > But he also said it shouldn't be a stopper to include/exclude it. > > > > > > > > > So can we agree on those new parameters, and add

Re: [CF-metadata] standard names for sediment trap data

2016-03-15 Thread Lowry, Roy K.
late organic matter), adding the word "dry" would add > clarity. And, I DO especially like Matthias' cake batter analogy though. Thanks - Nan On 3/10/16 4:49 AM, Lowry, Roy K. wrote: > Dear All, > > I totally agree with Matthias. I have never been fully comfortable with t

Re: [CF-metadata] standard name for oxygen concentration in seawater as a percentage

2016-04-06 Thread Lowry, Roy K.
Hello John, By '% oxygen concentration in seawater' do you mean what I would term oxygen saturation? In 35 years I have seen oxygen CONCENTRATION expressed in many units - ml/l, micrograms/litre, micromoles/litre and micromoles/kilogram - but never in per cent. I have, however, frequently

Re: [CF-metadata] vertical coordinate for bed stratigraphy / sediment layers

2016-03-01 Thread Lowry, Roy K.
Thanks Bert, You've persuaded me that the proposed reference surface should be beneath any ice cover. We still need to decide what to call it! Cheers, Roy. Please note that I partially retired on 01/11/2015. I am now only working 7.5 hours a week and can only guarantee e-mail response on

Re: [CF-metadata] Recording requirements expressed in standard name definitions

2016-07-14 Thread Lowry, Roy K.
<martin.juc...@stfc.ac.uk> Sent: 14 July 2016 14:10 To: Lowry, Roy K.; cf-metadata@cgd.ucar.edu Subject: RE: [CF-metadata] Recording requirements expressed in standard name definitions Hi Roy, I can see how that might work. However, I still think it would still be useful to have a c

Re: [CF-metadata] Recording requirements expressed in standard name definitions

2016-07-13 Thread Lowry, Roy K.
should be sent to enquir...@bodc.ac.uk. Please also use this e-mail if your requirement is urgent. From: martin.juc...@stfc.ac.uk <martin.juc...@stfc.ac.uk> Sent: 13 July 2016 16:36 To: Lowry, Roy K.; cf-metadata@cgd.ucar.edu Subject: RE: [CF-metadata] Rec

Re: [CF-metadata] Recording requirements expressed in standard name definitions

2016-07-13 Thread Lowry, Roy K.
Dear Martin, This sounds an excellent idea. What do you thinks of the idea of building the knowledge into NVS to make it accessible in machine-readable form and so the requirements could be enforced by the CF checker? Cheers, Roy. -Original Message- From: CF-metadata

Re: [CF-metadata] Waves

2016-07-13 Thread Lowry, Roy K.
into the master system. I will be in touch later in the year. Cheers, Roy. From: Peters, Herman (CIV) [mailto:herman.pet...@rws.nl] Sent: 13 July 2016 12:54 To: 'cf-metadata-boun...@cgd.ucar.edu' Cc: 'cf-metadata@cgd.ucar.edu'; 'm...@puertos.es'; Lowry, Roy K.; Chris Barker; Elodie Fernandez; 'Jonathan Gregory

Re: [CF-metadata] New standard name for mass_fraction_of_petroleum_in_sea_water

2016-06-29 Thread Lowry, Roy K.
Dear Mike and Ute, There is a parameter 'total petroleum hydrocarbons' (TPH) defined as 'A mixture comprising all substances comprising totally of carbon and hydrogen that may be extracted from a sample using an organic solvent. These are presumed sourced from crude oil.'. This is used by the

Re: [CF-metadata] New standard name for mass_fraction_of_petroleum_in_sea_water

2016-07-09 Thread Lowry, Roy K.
to enquir...@bodc.ac.uk. Please also use this e-mail if your requirement is urgent. From: CF-metadata <cf-metadata-boun...@cgd.ucar.edu> on behalf of Lowry, Roy K. <r...@bodc.ac.uk> Sent: 06 July 2016 11:28 To: Jonathan Gregory; cf-metadata@cgd.uca

Re: [CF-metadata] New standard name for mass_fraction_of_petroleum_in_sea_water

2016-07-06 Thread Lowry, Roy K.
Dear Jonathan, I think we've lost the thread a little here. I initially suggested TPH until I realised the nature of Mike's measurements. Once I did I withdrew the suggestion. Therefore the 'total' or 'no total' debate is possibly a red herring. Cheers, Roy. -Original Message- From:

Re: [CF-metadata] New standard name for mass_fraction_of_petroleum_in_sea_water

2016-06-30 Thread Lowry, Roy K.
ning too and therefore convey some extra information? It would be good to be explicit if that is the case. Best wishes Jonathan - Forwarded message from mikegod...@yahoo.com - > Date: Thu, 30 Jun 2016 15:57:35 + > From: mikegod...@yahoo.com > To: "Lowry, Roy K."

Re: [CF-metadata] New standard name for mass_fraction_of_petroleum_in_sea_water

2016-07-01 Thread Lowry, Roy K.
Hi Chris, I applaud your proposed holistic approach that will cover both modelling and measurement of crude oil contamination. This will obviously take time and so you're proposing a generic Name with the contaminant specified in the long name as a stop-gap. This causes me some concern from

Re: [CF-metadata] WG: proposal for two new standard_names and an additional chemical species

2017-02-20 Thread Lowry, Roy K.
Agreed. Cheers, Roy. Please note that I partially retired on 01/11/2015. I am now only working 7.5 hours a week and can only guarantee e-mail response on Wednesdays, my day in the office. All vocabulary queries should be sent to enquir...@bodc.ac.uk. Please also use this e-mail if your

Re: [CF-metadata] Proposed standard name for petroleum in sea water

2017-01-19 Thread Lowry, Roy K.
Dear Mike, My understanding is that the discussion reached a successful consensus as per your e-mail below and therefore it should be in the queue for inclusion without any need for further action. Cheers, Roy. Please note that I partially retired on 01/11/2015. I am now only working 7.5

Re: [CF-metadata] Discussion of technical CF issues as GitHub issues?

2017-02-27 Thread Lowry, Roy K.
Dear All, I can see the sense for the technical issues, but for Standard Name proposal discussions I would prefer to keep to the current system of e-mail plus the CEDA thread-tracking system unless Alison would like to see that replaced by GitHub. Having e-mail thread 'clarification' split

Re: [CF-metadata] new standard names request

2017-02-28 Thread Lowry, Roy K.
Hi Steve, I think there is a CF precedent would pacify you a little here, which is to have Standard Names of the form 'volume_mixing_ratio' with canonical units of dimensionless such as volume_mixing_ratio_of_oxygen_at_stp_in_sea_water. I would suggest following this practice in this case

[CF-metadata] Fw: radiosonde ascent rate?

2016-08-31 Thread Lowry, Roy K.
if your requirement is urgent. From: Lowry, Roy K. Sent: 31 August 2016 09:25 To: ngalbra...@whoi.edu Subject: Re: [CF-metadata] radiosonde ascent rate? Dear Nan, I have never seen descent rate included as a CTD data parameter. Occasionally, I have seen

Re: [CF-metadata] Temporal nitpicks. Was: CF-metadata Digest, Vol 161, Issue 3

2016-09-22 Thread Lowry, Roy K.
Hi Chris, One time zone label (Z for UT) is valid in 8601. In SeaDataNet we took the decision some 10 years back to 'profile' ISO8601 by disallowing any character to the right of the seconds and defining the result as UT. The reason this was done was to prevent data delivery in local time

Re: [CF-metadata] New standard name for geostrophic ocean velocities

2016-09-30 Thread Lowry, Roy K.
Look fine to me as well. Cheers, Roy. Please note that I partially retired on 01/11/2015. I am now only working 7.5 hours a week and can only guarantee e-mail response on Wednesdays, my day in the office. All vocabulary queries should be sent to enquir...@bodc.ac.uk. Please also use this

Re: [CF-metadata] New standard names for OMIP biogeochemistry and chemistry

2016-10-19 Thread Lowry, Roy K.
Hi Alison, First of all, apologies for not commenting sooner - looking at this proposal as been on my todo list, but I hadn't got around to it. However, your e-mail makes it look like you're approaching end game so I thought I'd better provide some input. I would suggest changing the C13

Re: [CF-metadata] New standard names for OMIP biogeochemistry and chemistry

2016-10-21 Thread Lowry, Roy K.
also use this e-mail if your requirement is urgent. From: John Dunne - NOAA Federal <john.du...@noaa.gov> Sent: 21 October 2016 20:31 To: Lowry, Roy K. Cc: Jonathan Gregory; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] New standard names fo

Re: [CF-metadata] New standard names for OMIP biogeochemistry and chemistry

2016-10-21 Thread Lowry, Roy K.
Hello John, I'm getting a little confused here. Why is the dimensionality of the surface measurement different? I would have expected it to be something like mol m-3 for concentrations at any depth. Or am I misunderstanding what you wish to describe? Cheers, Roy. Please note that I

Re: [CF-metadata] White space in CF standard names

2016-11-01 Thread Lowry, Roy K.
queries should be sent to enquir...@bodc.ac.uk. Please also use this e-mail if your requirement is urgent. From: Gwyn Fireman <gwyn.f.fire...@nasa.gov> Sent: 01 November 2016 14:22 To: Lowry, Roy K.; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] White

Re: [CF-metadata] New standard names for OMIP biogeochemistry and chemistry

2016-11-04 Thread Lowry, Roy K.
Dear John, Following these comments, I now wonder a little more about your previous comment on differences in dimensionality between your surface concentrations and concentrations at depth. Could you clarify what the units of measure are for your 2D simulations? Are they concentrations per

Re: [CF-metadata] New standard_names for ocean biogeochemistry

2016-12-06 Thread Lowry, Roy K.
Dear All, Some additional information on 'chorophyll-a fluorescence' in observational oceanography. As John says, strictly speaking fluorescence is the amount of radiation within a given waveband resulting from excitation. It could also be expressed as a dimensionless parameter that is the

Re: [CF-metadata] standard name for CDOM

2016-12-20 Thread Lowry, Roy K.
Hello Matthias, The Standard Name: concentration_of_colored_dissolved_organic_matter_in_sea_water_expressed_as_equivalent_mass_fraction_of_quinine_sulfate_dihydrate was set up to describe the measurements made by an ECO. Providing you have done nothing to recalibrate the data from the CTD

[CF-metadata] Trac #154

2016-12-22 Thread Lowry, Roy K.
Dear Martin, We serve the Standardized regions on NVS at http://vocab.nerc.ac.uk/collection/P30/current/ Cheers, Roy. Please note that I partially retired on 01/11/2015. I am now only working 7.5 hours a week and can only guarantee e-mail response on Wednesdays, my day in the office. All

Re: [CF-metadata] Silicate vs. dissolved inorganic silicon

2017-03-24 Thread Lowry, Roy K.
Dear All, If one makes the assumption that all the silicon and phosphorus atoms not associated with organic ligands are in a single chemical form associated with oxygen in solution then what Martin says is correct. In my experience I have never known anybody challenge this assumption and I

Re: [CF-metadata] Silicate vs. dissolved inorganic silicon

2017-03-28 Thread Lowry, Roy K.
if your requirement is urgent. From: James Orr <james@lsce.ipsl.fr> Sent: 27 March 2017 12:23 To: Lowry, Roy K. Cc: John Dunne - NOAA Federal; <martin.juc...@stfc.ac.uk>; Alison Pamment; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Silicate v

Re: [CF-metadata] Silicate vs. dissolved inorganic silicon

2017-03-28 Thread Lowry, Roy K.
19:11 To: James Orr Cc: Lowry, Roy K.; <martin.juc...@stfc.ac.uk>; Alison Pamment; cf-metadata@cgd.ucar.edu Subject: Re: [CF-metadata] Silicate vs. dissolved inorganic silicon and the push started even earlier than that, e.g.: Goering, J.J., Nelson, D.M. and Carter, J.A., 1973. Silicic acid uptake

<    1   2   3   4   >