Author: gnaylor Date: Fri Sep 23 21:16:44 2016 New Revision: 1762093 URL: http://svn.apache.org/viewvc?rev=1762093&view=rev Log: Add new ref Auto vs Man Prov Ext and resort 2015
Modified: incubator/taverna/site/trunk/content/community/references.md Modified: incubator/taverna/site/trunk/content/community/references.md URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/community/references.md?rev=1762093&r1=1762092&r2=1762093&view=diff ============================================================================== --- incubator/taverna/site/trunk/content/community/references.md (original) +++ incubator/taverna/site/trunk/content/community/references.md Fri Sep 23 21:16:44 2016 @@ -24,6 +24,9 @@ See also [publications](/community/publi ## 2016 +Pinar Alper, Khalid Belhajjame, Carole A. Goble. (2016). **Automatic vs Manual Provenance Abstractions: Mind the Gap.** +Preprint accepted to the 2016 workshop on the Theory and Applications of Provenance, TAPP 2016. [arXiv:1605.06669v1](https://arxiv.org/abs/1605.06669v1) [cs.SE] +[[download PDF]](https://www.usenix.org/system/files/conference/tapp16/tapp16-paper-alper.pdf) Arzu Tugce Guler, Cathelijn J. F. Waaijer, Magnus Palmblad. (2016). **Scientific workflows for bibliometrics.** @@ -38,6 +41,11 @@ In: _Annals of the Rheumatic Diseases_ 2 ## 2015 +Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith. (2015). +**BioAcoustica: a free and open repository and analysis platform for bioacoustics** +In *Database* **2015**(bav054). +[doi:10.1093/database/bav054](http://dx.doi.org/10.1093/database/bav054) + Khalid Belhajjame, Jun Zhao, Daniel Garijo, Matthew Gamble, Kristina Hettne, Raúl Palma, Eleni Mina, Oscar Corcho, José Manuel Gómez-Pérez, Sean Bechhofer, Graham Klyne, Carole Goble. (2015). @@ -45,34 +53,28 @@ Graham Klyne, Carole Goble. (2015). In: *Journal of Web Semantics: Scence, Services and Agents on the World Wide Web*. **32**: 16–42. [doi:10.1016/j.websem.2015.01.003](http://dx.doi.org/10.1016/j.websem.2015.01.003) -Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015). -**Scientific workflow optimization for improved peptide and protein identification.** -In: *BMC Bioinformatics* **16**(1): 1–13. -[doi:10.1186/s12859-015-0714-x](http://dx.doi.org/10.1186/s12859-015-0714-x) - -Steve OâHagan, Douglas B. Kell. (2015). -**Software review: the KNIME workflow environment and its applications in genetic programming and machine learning**. -In: *Genetic Programming and Evolvable Machines* **16**(3) 387–391. -[doi:10.1007/s10710-015-9247-3](http://dx.doi.org/10.1007/s10710-015-9247-3) -[[preprint]](http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf) - Renato De Giovanni, Alan R. Williams, Vera Hernández Ernst, Robert Kulawik, Francisco Quevedo Fernandez, Alex R. Hardisty. (2015). **ENM Components: a new set of web service-based workflow components for ecological niche modelling**. In: *Ecography* **39**(4). [doi:10.1111/ecog.01552](http://dx.doi.org/10.1111/ecog.01552) -Edward Baker, Ben W. Price, S. D. Rycroft1, Jon Hill, Vincent S. Smith. (2015). -**BioAcoustica: a free and open repository and analysis platform for bioacoustics** -In *Database* **2015**(bav054). -[doi:10.1093/database/bav054](http://dx.doi.org/10.1093/database/bav054) +Susana Sánchez Expósito, Pablo MartÃn, Jose Enrique RuÃz, Lourdes Verdes-Montenegro, Julian Garrido, +Raül Sirvent Pardell, Antonio RuÃz Falcó, Rosa Badia. (2015). +**Web services as building blocks for Science Gateways in Astrophysics**. +At: _7th International Workshop on Science Gateways (IWSG) 2015_ +[doi:10.1109/IWSG.2015.7](http://dx.doi.org/10.1109/IWSG.2015.7) +[[pdf]](http://amiga.iaa.es/FCKeditor/UserFiles/File/BuildingBlocks.pdf) -Yassene Mohammed, Christoph H. Borchers. (2015). -**An extensive library of surrogate peptides for all human proteins** -_Journal of Proteomics_ **129**: 93–97. -[doi:10.1016/j.jprot.2015.07.025](http://dx.doi.org/10.1016/j.jprot.2015.07.025) -[[researchgate]](https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins) -_preprint not currently available_ +Sonja Holl, Yassene Mohammed, Olav Zimmermann, Magnus Palmblad. (2015). +**Scientific workflow optimization for improved peptide and protein identification.** +In: *BMC Bioinformatics* **16**(1): 1–13. +[doi:10.1186/s12859-015-0714-x](http://dx.doi.org/10.1186/s12859-015-0714-x) + +Jeremy Leipzig. (2015). +**A review of bioinformatic pipeline frameworks**. +In: _Briefings in bioinformatics_ (2016) 1–7 bbw020. +[doi:10.1093/bib/bbw020](http://dx.doi.org/10.1093/bib/bbw020) Ji Liu, Esther Pacitti, Patrick Valduriez, Marta Mattoso. (2015). **A Survey of Data-Intensive Scientific Workflow Management** @@ -81,24 +83,24 @@ In: _Journal of Grid Computing_ **13**: [[pdf]](http://www-sop.inria.fr/members/Patrick.Valduriez/pmwiki/Patrick/uploads//Publications/jogc2015) [[researchgate]](https://www.researchgate.net/publication/304292492_A_Survey_on_Scheduling_Workflows_in_Cloud_Environment) - -Susana Sánchez Expósito, Pablo MartÃn, Jose Enrique RuÃz, Lourdes Verdes-Montenegro, Julian Garrido, -Raül Sirvent Pardell, Antonio RuÃz Falcó, Rosa Badia. (2015). -**Web services as building blocks for Science Gateways in Astrophysics**. -At: _7th International Workshop on Science Gateways (IWSG) 2015_ -[doi:10.1109/IWSG.2015.7](http://dx.doi.org/10.1109/IWSG.2015.7) -[[pdf]](http://amiga.iaa.es/FCKeditor/UserFiles/File/BuildingBlocks.pdf) - Fabrizio Marozzo, Domenico Talia, Paolo Trunfio. (2015). **JS4Cloud: script-based workflow programming for scalable data analysis on cloud platforms** In: *Concurrency and Computation: Practice and Experience*. **27**(17)" 5214–5237. [doi:10.1002/cpe.3563](http://dx.doi.org/10.1002/cpe.3563) [[researchgate]](https://www.researchgate.net/publication/280971659_JS4Cloud_Script-based_workflow_programming_for_scalable_data_analysis_on_cloud_platforms) -Jeremy Leipzig. (2015). -**A review of bioinformatic pipeline frameworks**. -In: _Briefings in bioinformatics_ (2016) 1–7 bbw020. -[doi:10.1093/bib/bbw020](http://dx.doi.org/10.1093/bib/bbw020) +Yassene Mohammed, Christoph H. Borchers. (2015). +**An extensive library of surrogate peptides for all human proteins** +_Journal of Proteomics_ **129**: 93–97. +[doi:10.1016/j.jprot.2015.07.025](http://dx.doi.org/10.1016/j.jprot.2015.07.025) +[[researchgate]](https://www.researchgate.net/publication/280602358_An_Extensive_Library_of_Surrogate_Peptides_for_all_Human_Proteins) +_preprint not currently available_ + +Steve OâHagan, Douglas B. Kell. (2015). +**Software review: the KNIME workflow environment and its applications in genetic programming and machine learning**. +In: *Genetic Programming and Evolvable Machines* **16**(3) 387–391. +[doi:10.1007/s10710-015-9247-3](http://dx.doi.org/10.1007/s10710-015-9247-3) +[[preprint]](http://www.taverna.org.uk/pages/wp-content/uploads/2015/2015-Hagan-Kell-KNIME-software-review.pdf) ## 2014