Re: [COOT] C-alpha disappear

2008-10-05 Thread Feng Yu
Coot 0.5 doesn't support old pdb format and cannot add element column. m2.pdb is old format, so you must convert it. for example pdbset XYZIN m2.pdb XYZOUT m2-pdbset.pdb eof cell 100 100 100 90 90 90 spacegroup p1 eof I attach the converted file, and it shows well in C-alpha. m2-pdbset.pdb

Re: [COOT] CNS coordinate in COOT

2008-10-05 Thread William G. Scott
run the pdb file through ccp4's pdbset, which will canonicalize it (if that is a word). On Oct 5, 2008, at 5:59 PM, Masaki UNNO wrote: Hi Colleagues I am using CNS for structural refinements. I have installed COOT_0.5 but I think the new version of COOT cannot display CNS coordinate

[COOT] Problem with NCS on coot-0.5-final for intel 10.5

2008-10-05 Thread Sheena McGowan
Hi I have just downloaded the recent version of coot (following instructions on Bill Scott's wiki page). However everytime I try and do anything with NCS - the program shuts down? I am building a large hexamer and really want to use the 'apply ncs master edits' feature however the