[COOT] regularize zone fits to density?

2009-08-05 Thread Francis E Reyes
Hi all With the regularize zone button, does it fit it to the density and idealizes the residue or just the latter? Thanks FR - Francis Reyes M.Sc. 215 UCB University of Colorado at Boulder gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D 8AE2

Re: [COOT] regularize zone fits to density?

2009-08-05 Thread Schubert, Carsten [PRDUS]
Probably just the latter (guess on my part) If you need tighter geometry you can decrease the matrix weight under Extensions-Refine-Set Matrix for the real space refinement. The default (60, in 0.6pre) is suitable for good density, set it lower for marginal density. That way you still get good

Re: [COOT] Zalman Coot

2009-08-05 Thread William G. Scott
Dear Jürgen: I've been using the DVI cable provided and full resolution (I had to set this manually in display preferences). I assume what works with my mini and my airbook would also work with a macbook pro. I haven't tried the VGA option, but assume that would work too. One thing I

Re: [COOT] Zalman Coot

2009-08-05 Thread Paul Emsley
Coot will only work with Zalman with revision 2134+ Paul. William Scott wrote: I should add that I can only confirm that it works post revision 2134 The latest in fink is 2172. I'll make a new intel stand-alone if that helps. On Aug 5, 2009, at 11:46 AM, Jürgen Bosch wrote: My coot is