[COOT] cyclic peptide in coot

2012-06-21 Thread Alexander Batyuk
Dear developers, Is it still not possible to build a cyclic peptide (N- and C-termini linked) in coot? I'm trying to do this with a cyclic peptide linked via L-proline-D-proline. Thank you and best wishes, Alex -- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun

Re: [COOT] Add OXT

2012-06-21 Thread Phil Evans
Personally I would make colour-by-chain default. When would you not want it? On 21 Jun 2012, at 17:39, Paul Emsley wrote: > On 21/06/12 17:21, Phil Evans wrote: >> Why is is that when I add an OXT atom I lose my "colour by chain"? >> >> > > Because I wanted to make sure that you could see the

Re: [COOT] Add OXT

2012-06-21 Thread Paul Emsley
On 21/06/12 17:21, Phil Evans wrote: Why is is that when I add an OXT atom I lose my "colour by chain"? Because I wanted to make sure that you could see the added atom. If you were in CA mode, then you might wonder what happened. Hmm I suppose that I could add a check for all-atom mod

[COOT] Add OXT

2012-06-21 Thread Phil Evans
Why is is that when I add an OXT atom I lose my "colour by chain"? (OSX 4160) Phil