Re: [COOT] modeling thioester bond

2012-07-25 Thread Paul Emsley
On 25/07/12 16:20, Sebastiano Pasqualato wrote: Hi there, I'd like to model a thioester bond, starting from protein A with an exposed Cys, and having juxtaposed the carboxyl group of a C-terminal residue of protein B. The way I would like to proceed is by: 1) telling coot that there's a

[COOT] calculating rmsd from a plane

2012-07-25 Thread Jonathan Grimes
Is there a quick tool in Coot to calc the RMSD of N atoms from the best plane through those atoms. Thanks Jon Dr. Jonathan M. Grimes, NDM Senior Reseach Fellow University Research Lecturer Division of Structural Biology Wellcome Trust Centre for Human Genetics University of

Re: [COOT] calculating rmsd from a plane

2012-07-25 Thread Paul Emsley
On 25/07/12 18:38, Jonathan Grimes wrote: Is there a quick tool in Coot to calc the RMSD of N atoms from the best plane through those atoms. Yes. Measures - Plane Distances