[COOT] coot for RHEL 7.6

2019-05-20 Thread Darin Lory
Coot-Gurus, i downloaded and installed both the coot-Linux-x86_64-scientific-linux-7.5-pre-release-gtk2-python and coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python pre-compiled binaries to run a RHEL 7.6 server. I read through the FAQ https://www2.mrc-lmb.cam.ac.uk/personal/pems

Re: [COOT] Writing a script for iterative sphere refinement

2019-05-20 Thread Paul Bond
The thresholds Coot uses for the different colours in the dialogue are: < 0.0 Black < 1.4 Green < 2.2 Yellow < 3.0 Orange >= 3.0 Red On Mon, 20 May 2019 at 09:48, Ahmad Khalifa wrote: > That's great, thanks. What are the cutoffs that coot uses? I want to use > Coot native parameters first to do

Re: [COOT] Writing a script for iterative sphere refinement

2019-05-20 Thread Ahmad Khalifa
That's great, thanks. What are the cutoffs that coot uses? I want to use Coot native parameters first to do some testing before I do any major modifications. Regards. On Mon, May 20, 2019 at 4:12 AM Paul Bond < 30b0cd59fccb-dmarc-requ...@jiscmail.ac.uk> wrote: > Hi Ahmad, > > If you want t

Re: [COOT] Writing a script for iterative sphere refinement

2019-05-20 Thread Paul Bond
Hi Ahmad, If you want to use the values from the accept refinement dialog, they are available from the refine_residues function: imol = 0 residue_list = [["A", 10, ""], ["A", 20, ""], ["A", 30, ""], ["A", 40, ""]] # for example set_undo_molecule(imol) for rs in residue_list: rnr = residues_nea