Hi Kate, if you're unable to get these outliers to fit, you might consider that
there's a bigger problem like a register error, cis-peptide, incorrect backbone
tracing, etc. If you have high resolution structures available for comparison
if can be helpful.
Best wishes
Kevin
Sent from my phone
Hello!
I'm working on refinement for a cryoEM structure at 3.4 Å. For this resolution,
I'm aiming for 0 Ramachandran outliers, because I just don't have the density
to defend their existence. Through iterative refinements in Phenix Real Space
Refine and Coot, I've been able to get my Ramachandr
Dear Paul
I looked back the forum and similar to Taka's issue in 0.9.8.4 I am also
experience it with both Coot 0.9.8.6 EL (ccp4 build) and 0.9.8.5 (ccpEM) build.
MacOS 12.6.1
It seems very similar to Taka's issue where if I add an NAG using the
Carbohydrate module, I get my NAG, but no link.
