[COOT] coot crushes in the beginning

refs to ObjectCache: Leaked 0001 refs to Best, Arto

[COOT] copy fragment command

found the copy_molecule or copy_chain, but I do not want to copy whole chain, only a "fragment" (specific residues). Is there command (python) to copy fragment? Best, Arto

[COOT] copy fragment command

ing chain id? Best, Arto

[COOT] RNA backbone breaking problem

esidues back to polynucleotide form, and you were able to anneal the broken residues by "Regularize Zone". Is there problem with monomer library, as I got restraints for RNA residues from "Get monomer" for Ar, Gr, Cr, and Ur or other reason? Best, Arto

Re: [COOT] copy fragment command

Thanks for the help! Best, Arto On Wed, Apr 24, 2013 at 3:48 AM, Bernhard Lohkamp wrote: > > For merging use: > > merge_molecule([list of things to merge], imol_to_be_merged_into) > > As for renaming chains: > > change_chain_id(imol, new_chain_id, chain_id_in, use_res_

[COOT] coot-0.9 compiling problem

arget 'protein_db.lo' failed make[1]: *** [protein_db.lo] Error 1 make[1]: Leaving directory '/home/arto/programs/coot-0.9/protein_db' Makefile:700: recipe for target 'check-recursive' failed make: *** [check-recursive] Error 1 So, it is seemingly mmdb and clipper installation prob

[COOT] autobuild libccp4-6.5.1.tar.gz

files moved to LMB server but what server commands I would need to specify or change the autobuild completely as other dependencies try to download also from /ftp.ccp4.ac.uk Regards, Arto To unsubscribe from the COOT list

Re: [COOT] autobuild libccp4-6.5.1.tar.gz

Hey Paul, Thanks for pointing out that the script is outdated. Found the version build-it-3-3. It starts to download the dependencies but eventually it reached to the point where it can not find the _version.py It says " ls: cannot access '/home/arto/autobuild/Linux-arto1-gtk3/lib