[COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

2013-01-14 Thread Davi de Miranda Fonseca
Dear all, I am working with a 4-fold NCS. Chain A has residues 273 through 278 pretty messed up, but those residues from Chain B seem to fit pretty well the density for Chain A (as seem by NCS Ghost Control). Hence I would to replace residues 273-278 of Chain A by those of Chain B with approp

Re: [COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

2013-01-14 Thread Francis E Reyes
Does Extensions -> NCS -> Copy NCS Residue Range not work ? F On Jan 14, 2013, at 12:41 PM, Davi de Miranda Fonseca wrote: > Dear all, > > I am working with a 4-fold NCS. Chain A has residues 273 through 278 pretty > messed up, but those residues from Chain B seem to fit pretty well the > d

Re: [COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

2013-01-14 Thread Davi de Miranda Fonseca
I would rather avoid using it, since (from what I understood) it would also replace residues 273-278 of chains C and D. Isn't this correct? But I gave it a try, however it does not seem to change my model. Output: INFO: operating on molecule number 2 WARNING:: failed to find master_chain_id "B"

Re: [COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

2013-01-14 Thread Engin Özkan
I vaguely remember that setting the reference chain to your chain of choice in the "NCS Ghost Control" dialog somehow makes the "Copy NCS Residue Range" work for non-A chains. I may be wrong. Engin On 1/14/13 3:33 PM, Davi de Miranda Fonseca wrote: I would rather avoid using it, since (from wh

Re: [COOT] Help needed with copy-residue-range-from-ncs-master-to-chains

2013-01-14 Thread Bernhard Lohkamp
You appear to be mixing syntaxes for the scripting languages. Maybe first make sure you are using pure python... http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Python_to_Scheme_and_return ..and yes, try the Extensions and make sure you have consistent master chains. B Dea