Re: [COOT] Insert a atom based on x,y,z coordinates in a python script

2024-07-15 Thread Nav Mon
I see. Thanks for your quick response. On Mon, Jul 15, 2024 at 2:52 PM Paul Emsley wrote: > > On 15/07/2024 07:26, Nav wrote: > > > > Thanks for the help in using coordinates to insert a typed atom with > 'place_typed_atom_at_pointer' routine. > > But I get the following warning when I try to in

Re: [COOT] Insert a atom based on x,y,z coordinates in a python script

2024-07-15 Thread Paul Emsley
On 15/07/2024 07:26, Nav wrote: Thanks for the help in using coordinates to insert a typed atom with 'place_typed_atom_at_pointer' routine. But I get the following warning when I try to insert a water 'WARNING:: new atom addition blocked by nearby atom' and the insertion fails. Is there a way

Re: [COOT] Insert a atom based on x,y,z coordinates in a python script

2024-07-14 Thread Nav
Thanks for the help in using coordinates to insert a typed atom with 'place_typed_atom_at_pointer' routine. But I get the following warning when I try to insert a water 'WARNING:: new atom addition blocked by nearby atom' and the insertion fails. Is there a way to enforce inserting the atom into

Re: [COOT] Insert a atom based on x,y,z coordinates in a python script

2024-06-14 Thread Paul Emsley
On 14/06/2024 13:21, Nav wrote: CAUTION: This email originated from outside of the LMB: .-owner-c...@jiscmail.ac.uk-. Do not click links or open attachments unless you recognize the sender and know the content is safe. If you think this is a phishing email, please forward it to phish...@mrc-lmb

[COOT] Insert a atom based on x,y,z coordinates in a python script

2024-06-14 Thread Nav
Hi Coot users, I'm a new COOT user and using version 0.9.8. I'm trying to write a Python script and I want to insert an atom to a position based on a criteria. My input is the new x,y,z coordinates I have calculated. Could you help me with that? It can be done with the mouse clicked positi