I've found a quick workaround that works for different MacOS versions
Download MacOS Coot 9.8.1 standalone from CCP-EM
https://www.ccpem.ac.uk/download.php
In Phenix point it to coot-0.9.8.1/bin/coot
Real space refinement and the connection to Phenix works
Best
Ricardo
On Wed, Aug 10, 2022 at 8:3
I had the same issue (MacOS Catalina 10.15.7 and the same phenix version).
The fix was:
In PHENIX Home screen, click on Preferences, then click on the graphics
tab, in the Coot path box point it to the coot.app as in
(/Applications/ccp4-8.0/coot.app) instead of
(/Applications/ccp4-8.0/bin/coot)
I
On 08/08/2022 16:04, Kenneth Satyshur wrote:
You can tell phenix where to find coot. Point coot to the ccp4
version, which has the libs. The stand alone version may not have the
link to the lib that is maintained by ccp4.
I thought that it was the other way around! :-)
Use the environment
You can tell phenix where to find coot. Point coot to the ccp4 version, which
has the libs. The stand alone version may not have the link to the lib that is
maintained by ccp4.
kas
Kenneth A. Satyshur, M.S., Ph.D.
Senior Scientist, Retired From:
College of Ag and Life Sciences: Department of
