Re: [COOT] SMILES all trans

2008-10-01 Thread Paul Emsley
Giles Robertson wrote: Dear folks, Just wanted to point out that in version 0.5 (and older) the cis trans isomerism gets messed up when reading in the smiles code for a small molecule. For example C/C=C/C looks the same as C/C=C\C. Although it is possible to edit the .cif file manually, I

[COOT] SMILES all trans

2008-10-01 Thread Giles Robertson
Dear folks, Just wanted to point out that in version 0.5 (and older) the cis trans isomerism gets messed up when reading in the smiles code for a small molecule. For example C/C=C/C looks the same as C/C=C\C. Although it is possible to edit the .cif file manually, I just thought, you k