MATSUURA Takanori wrote:
Hi all,
From: Tim Fenn <[EMAIL PROTECTED]>
Subject: Re: [COOT] can coot link to fftw3?
Date: Tue, 2 Sep 2008 10:20:17 -0700
try compiling clipper with -fno-strict-aliasing, or drop the
optimization flags to -O1 or lower.
For fundamental solution is "use
Hi all,
From: Tim Fenn <[EMAIL PROTECTED]>
Subject: Re: [COOT] can coot link to fftw3?
Date: Tue, 2 Sep 2008 10:20:17 -0700
> try compiling clipper with -fno-strict-aliasing, or drop the
> optimization flags to -O1 or lower.
For fundamental solution is "use union type&quo
Thanks Tim and everyone for suggestions.
I finally got it to work by linking the single-precision libraries:
zsh-% otool -L /sw/bin/coot | grep fft
/sw/lib/libsrfftw.2.dylib (compatibility version 3.0.0,
current version 3.7.0)
/sw/lib/libsfftw.2.dylib (compatibility version 3.0
On Tue, 2 Sep 2008 07:27:17 -0700 "William G. Scott"
<[EMAIL PROTECTED]> wrote:
> Hi Kevin:
>
> My problem is this:
>
> If coot (the binary itself) links to fftw v. 2.1.5, it crashes,
> reporting a memory conflict error, upon trying to calculate a map.
> (This happens whether I link to dyna
Hi Kevin:
My problem is this:
If coot (the binary itself) links to fftw v. 2.1.5, it crashes,
reporting a memory conflict error, upon trying to calculate a map.
(This happens whether I link to dynamic or static libraries, contrary
to my previous report to Paul.) If coot links to fftw v.
No, it can't. Clipper only speaks to fftw v2.
If fftw v2 is a problem, you can build clipper without fftw at all by
using the kiss-fft overlay which removes the fftw dependence.
http://www.ysbl.york.ac.uk/~cowtan/clipper/loveboat.html
That saves one dependency, but the calculation of maps will
If so, how do you tell configure?
Thanks.
William G. Scott
Contact info:
http://chemistry.ucsc.edu/~wgscott/
