[PathwayCommons/factoid]

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[PathwayCommons/factoid] b6c210: users can run neo4j tests using `npm run neo4j-test`

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: b6c2100be56b9c7b7e801a49703a580fc0ab61f1 https://github.com/PathwayCommons/factoid/commit/b6c2100be56b9c7b7e801a49703a580fc0ab61f1 Author: Linda (Jia Wen) Li Date: 2023-04-14 (Fri, 14 Apr 2023)

[PathwayCommons/factoid] 3b34d2: use transaction instead of executeRead/Write. Warn...

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 3b34d2bf3c76027521d60348372e55be01bea8a8 https://github.com/PathwayCommons/factoid/commit/3b34d2bf3c76027521d60348372e55be01bea8a8 Author: Linda (Jia Wen) Li Date: 2023-04-26

[PathwayCommons/factoid] 8ec5dd: delete READ.me line about neo4j tests

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670 https://github.com/PathwayCommons/factoid/commit/8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670 Author: Linda (Jia Wen) Li Date: 2023-04-25

[PathwayCommons/factoid] f7b1a1: small change with async/await in test-functions

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: f7b1a1e9d938ab66af5f2b450d296392c418bfc3 https://github.com/PathwayCommons/factoid/commit/f7b1a1e9d938ab66af5f2b450d296392c418bfc3 Author: Linda (Jia Wen) Li Date: 2023-04-25

[PathwayCommons/factoid] 7d3a59: move docker-compose.yml and .env to parent directory

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 7d3a59022c8fc9d287047393eb022d8aa7181919 https://github.com/PathwayCommons/factoid/commit/7d3a59022c8fc9d287047393eb022d8aa7181919 Author: Linda (Jia Wen) Li Date: 2023-04-24

[PathwayCommons/factoid] c5f9f1: small change with async/await in neo4j-functions.js

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: c5f9f13cccb768b50494b6af024ea5e23bfd9791 https://github.com/PathwayCommons/factoid/commit/c5f9f13cccb768b50494b6af024ea5e23bfd9791 Author: Linda (Jia Wen) Li Date: 2023-04-24

[PathwayCommons/factoid] 077675: documentation for test-functions.js

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 077675253bf181d29bc387dfaa4e6d35309f8f0b https://github.com/PathwayCommons/factoid/commit/077675253bf181d29bc387dfaa4e6d35309f8f0b Author: Linda (Jia Wen) Li Date: 2023-04-21

[PathwayCommons/factoid] 53290c: import tweak

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 53290c5e470ca8527b4d3908e08b5c31c4b98eed https://github.com/PathwayCommons/factoid/commit/53290c5e470ca8527b4d3908e08b5c31c4b98eed Author: Linda (Jia Wen) Li Date: 2023-04-21

[PathwayCommons/factoid] 7a5690: tweak tests. Still commenting out suites that give...

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 7a5690fc84a58de2881245bff3f7c10b88091e28 https://github.com/PathwayCommons/factoid/commit/7a5690fc84a58de2881245bff3f7c10b88091e28 Author: Linda (Jia Wen) Li Date: 2023-04-20

[PathwayCommons/factoid] cb59ea: Add config variable for Graph DB CRON jobs

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: cb59eacbb208207162324f46090974d99e05debe https://github.com/PathwayCommons/factoid/commit/cb59eacbb208207162324f46090974d99e05debe Author: Jeffrey Wong Date: 2023-04-11 (Tue,

[PathwayCommons/factoid] 4fdd73: documentation for neo4j-document.js

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 4fdd7316d62ec87e8598e039fe5c2d0e659d6e22 https://github.com/PathwayCommons/factoid/commit/4fdd7316d62ec87e8598e039fe5c2d0e659d6e22 Author: Linda (Jia Wen) Li Date: 2023-04-20

[PathwayCommons/factoid] 658003: move neo4j tests to main test folder. Comment out ...

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 65800325fa3d2e52657ec3af5379203f80b40d9a https://github.com/PathwayCommons/factoid/commit/65800325fa3d2e52657ec3af5379203f80b40d9a Author: Linda (Jia Wen) Li Date: 2023-04-20

[PathwayCommons/factoid] e543ce: adjust READ.me, npm run neo4j-test removed

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: e543ce4f3a69d4c09685a2dd03a85c7d9d1ff69e https://github.com/PathwayCommons/factoid/commit/e543ce4f3a69d4c09685a2dd03a85c7d9d1ff69e Author: Linda (Jia Wen) Li Date: 2023-04-19

[PathwayCommons/factoid] c4e65a: add config lines

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: c4e65a60bec552000653dfca2cbc4833fbbf24e6 https://github.com/PathwayCommons/factoid/commit/c4e65a60bec552000653dfca2cbc4833fbbf24e6 Author: Linda (Jia Wen) Li Date: 2023-04-18

[PathwayCommons/factoid] 572601: update READ.me for neo4j-test

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 572601301ea9a9036c6b00c2529d2c6621c067b1 https://github.com/PathwayCommons/factoid/commit/572601301ea9a9036c6b00c2529d2c6621c067b1 Author: Linda (Jia Wen) Li Date: 2023-04-14

[PathwayCommons/factoid] b6c210: users can run neo4j tests using `npm run neo4j-test`

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: b6c2100be56b9c7b7e801a49703a580fc0ab61f1 https://github.com/PathwayCommons/factoid/commit/b6c2100be56b9c7b7e801a49703a580fc0ab61f1 Author: Linda (Jia Wen) Li Date: 2023-04-14

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 2b6be2: update cypher query string to include apoc.lock

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 2b6be20fe304eef124c258c3cd1a8382923b51a4 https://github.com/PathwayCommons/factoid/commit/2b6be20fe304eef124c258c3cd1a8382923b51a4 Author: Linda (Jia Wen) Li Date: 2023-04-13 (Thu, 13 Apr 2023)

[PathwayCommons/factoid] fc087c: delete unused files

Branch: refs/heads/iss1173-neo4j-lock-relationships Home: https://github.com/PathwayCommons/factoid Commit: fc087cecac59a663abf1cf97ddfef0c561bb7d85 https://github.com/PathwayCommons/factoid/commit/fc087cecac59a663abf1cf97ddfef0c561bb7d85 Author: Linda (Jia Wen) Li Date: 2023-

[PathwayCommons/factoid] 2b6be2: update cypher query string to include apoc.lock

Branch: refs/heads/iss1173-neo4j-lock-relationships Home: https://github.com/PathwayCommons/factoid Commit: 2b6be20fe304eef124c258c3cd1a8382923b51a4 https://github.com/PathwayCommons/factoid/commit/2b6be20fe304eef124c258c3cd1a8382923b51a4 Author: Linda (Jia Wen) Li Date: 2023-

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] ee0705: add test for `a6b4351d-b474-49d9-bc3d-f044513d5a0c`

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 26d1cb: fixed so chebi ids are lower case in `component`

Branch: refs/heads/iss1156_submit-doc-2-graphdb Home: https://github.com/PathwayCommons/factoid Commit: 26d1cb3af0eada46b7e331c07e126e057cf4724c https://github.com/PathwayCommons/factoid/commit/26d1cb3af0eada46b7e331c07e126e057cf4724c Author: Linda (Jia Wen) Li Date: 2023-04-1

[PathwayCommons/factoid] bdc518: constraint function now in use

Branch: refs/heads/iss1156_submit-doc-2-graphdb Home: https://github.com/PathwayCommons/factoid Commit: bdc51810788b15601ba0211951526e9d71503cb2 https://github.com/PathwayCommons/factoid/commit/bdc51810788b15601ba0211951526e9d71503cb2 Author: Linda (Jia Wen) Li Date: 2023-04-1

[PathwayCommons/factoid] 3f1024: minor changes to test names

Branch: refs/heads/iss1156_submit-doc-2-graphdb Home: https://github.com/PathwayCommons/factoid Commit: 3f1024ffc3b96e7ec89ad47f233f921b1ec8a5ce https://github.com/PathwayCommons/factoid/commit/3f1024ffc3b96e7ec89ad47f233f921b1ec8a5ce Author: Linda (Jia Wen) Li Date: 2023-04-1

[PathwayCommons/factoid] 3a9dad: doc-tests-complex.js updated for 'group'

Branch: refs/heads/iss1164-neo4j-group Home: https://github.com/PathwayCommons/factoid Commit: 3a9dad0d81aa6e8321b44e8525cfe97c1a13ee45 https://github.com/PathwayCommons/factoid/commit/3a9dad0d81aa6e8321b44e8525cfe97c1a13ee45 Author: Linda (Jia Wen) Li Date: 2023-04-06 (Thu, 0

[PathwayCommons/factoid] 757ffa: doc-tests.js updated for 'group'

Branch: refs/heads/iss1164-neo4j-group Home: https://github.com/PathwayCommons/factoid Commit: 757ffa79eef36e0fd4c8f610e4f8d9f8f9fd2e69 https://github.com/PathwayCommons/factoid/commit/757ffa79eef36e0fd4c8f610e4f8d9f8f9fd2e69 Author: Linda (Jia Wen) Li Date: 2023-04-06 (Thu, 0

[PathwayCommons/factoid] 39e32d: delete unnecessary json test file

Branch: refs/heads/iss1164-neo4j-group Home: https://github.com/PathwayCommons/factoid Commit: 39e32d3a513dd697c0514221e091c7532c6a6933 https://github.com/PathwayCommons/factoid/commit/39e32d3a513dd697c0514221e091c7532c6a6933 Author: Linda (Jia Wen) Li Date: 2023-04-06 (Thu, 0

[PathwayCommons/factoid] 9e3bbe: merge neighbourhood and neighbourhoodWithoutComple...

Branch: refs/heads/iss1164-neo4j-group Home: https://github.com/PathwayCommons/factoid Commit: 9e3bbee4f277f75c31b240da9a16fb12da8f8ecb https://github.com/PathwayCommons/factoid/commit/9e3bbee4f277f75c31b240da9a16fb12da8f8ecb Author: Linda (Jia Wen) Li Date: 2023-04-05 (Wed, 0

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 9e3bbe: merge neighbourhood and neighbourhoodWithoutComple...

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 9e3bbee4f277f75c31b240da9a16fb12da8f8ecb https://github.com/PathwayCommons/factoid/commit/9e3bbee4f277f75c31b240da9a16fb12da8f8ecb Author: Linda (Jia Wen) Li Date: 2023-04-05 (Wed, 05 Apr 2023)

[PathwayCommons/factoid] 60586d: changed 'neighbouringNodes' field to 'nodes'

Branch: refs/heads/iss1163-neo4j-update-search-functions Home: https://github.com/PathwayCommons/factoid Commit: 60586d772537d3392864e58d385df8ddf18911b0 https://github.com/PathwayCommons/factoid/commit/60586d772537d3392864e58d385df8ddf18911b0 Author: Linda (Jia Wen) Li Date:

[PathwayCommons/factoid] 5a8456: added group field, partially tested

Branch: refs/heads/iss1164-neo4j-group Home: https://github.com/PathwayCommons/factoid Commit: 5a8456259c44c95bd07e7bef86c62450b5639786 https://github.com/PathwayCommons/factoid/commit/5a8456259c44c95bd07e7bef86c62450b5639786 Author: Linda (Jia Wen) Li Date: 2023-04-06 (Thu, 0

[PathwayCommons/factoid]

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[PathwayCommons/factoid] ed0b7f: documentation change and switching let to const

Branch: refs/heads/iss1163-neo4j-update-search-functions Home: https://github.com/PathwayCommons/factoid Commit: ed0b7fc1b521beaf258392c64995368e746f6617 https://github.com/PathwayCommons/factoid/commit/ed0b7fc1b521beaf258392c64995368e746f6617 Author: Linda (Jia Wen) Li Date:

[PathwayCommons/factoid] 08da27: get() updated and tested

Branch: refs/heads/iss1163-neo4j-update-search-functions Home: https://github.com/PathwayCommons/factoid Commit: 08da273649644771774bf1afa8279193fa0faa0d https://github.com/PathwayCommons/factoid/commit/08da273649644771774bf1afa8279193fa0faa0d Author: Linda (Jia Wen) Li Date:

[PathwayCommons/factoid] 61b6f3: testing for neighbourhoodReadable complete

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[PathwayCommons/factoid] 7e6140: made neighbourhoodReadable, untested

Branch: refs/heads/iss1163-neo4j-update-search-functions Home: https://github.com/PathwayCommons/factoid Commit: 7e6140bb2f2c998bce965bf40871e900c65113e2 https://github.com/PathwayCommons/factoid/commit/7e6140bb2f2c998bce965bf40871e900c65113e2 Author: Linda (Jia Wen) Li Date:

[PathwayCommons/factoid] f5916c: update getNeighbouringNodes and getInteractions

Branch: refs/heads/iss1163-neo4j-update-search-functions Home: https://github.com/PathwayCommons/factoid Commit: f5916cf597b606e171087c6c82562c4d0d0ba863 https://github.com/PathwayCommons/factoid/commit/f5916cf597b606e171087c6c82562c4d0d0ba863 Author: Linda (Jia Wen) Li Date:

[PathwayCommons/factoid] 6308ea: documentation, deleted neighbourhoodWithoutComplexes

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[PathwayCommons/factoid] 9e3bbe: merge neighbourhood and neighbourhoodWithoutComple...

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 4b5e5d: added query string and get(id) function, untested

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 4b5e5db24bb764a06b1d34aaf9a16d6adde68034 https://github.com/PathwayCommons/factoid/commit/4b5e5db24bb764a06b1d34aaf9a16d6adde68034 Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03 Apr 2023)

[PathwayCommons/factoid] a77609: "neo4j" is now in a variable

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: a7760976a4b7cb94b6e927f7c84dd506d9a951ed https://github.com/PathwayCommons/factoid/commit/a7760976a4b7cb94b6e927f7c84dd506d9a951ed Author: Linda (Jia Wen) Li Date: 2023-04-04 (Tue, 04

[PathwayCommons/factoid] 12b143: added test case 4, 5. Test suite finished

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: 12b1438c657d64262cf9671163f6d92034992e62 https://github.com/PathwayCommons/factoid/commit/12b1438c657d64262cf9671163f6d92034992e62 Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03

[PathwayCommons/factoid] 43b08e: added test case 2, test case 3

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: 43b08e494fa8dbf7bb6d43d3a89fa65eb17e1a8f https://github.com/PathwayCommons/factoid/commit/43b08e494fa8dbf7bb6d43d3a89fa65eb17e1a8f Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03

[PathwayCommons/factoid] 2f6fe7: add test case 0 and test case 1

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: 2f6fe7d58b1eb36a549504228f6b077361a4cefd https://github.com/PathwayCommons/factoid/commit/2f6fe7d58b1eb36a549504228f6b077361a4cefd Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03

[PathwayCommons/factoid] 2a6f5b: remove unnecessary catch blocks

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: 2a6f5b19e18b21695f03e5be6e01f018efde5cff https://github.com/PathwayCommons/factoid/commit/2a6f5b19e18b21695f03e5be6e01f018efde5cff Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03

[PathwayCommons/factoid] 4b5e5d: added query string and get(id) function, untested

Branch: refs/heads/iss1153-neo4j-get Home: https://github.com/PathwayCommons/factoid Commit: 4b5e5db24bb764a06b1d34aaf9a16d6adde68034 https://github.com/PathwayCommons/factoid/commit/4b5e5db24bb764a06b1d34aaf9a16d6adde68034 Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] f21fbc: remove old complex edge function

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: f21fbc211d8baacc05796e777c8c9dc99b54aed0 https://github.com/PathwayCommons/factoid/commit/f21fbc211d8baacc05796e777c8c9dc99b54aed0 Author: Linda (Jia Wen) Li Date: 2023-03-27 (Mon, 27 Mar 2023)

[PathwayCommons/factoid] 1e1def: put runner in add-all-docs.js, code runs

Branch: refs/heads/iss1156-neo4j-addalldocumentstoneo4j Home: https://github.com/PathwayCommons/factoid Commit: 1e1def8ff3863e03182f04117cc49902b30426c5 https://github.com/PathwayCommons/factoid/commit/1e1def8ff3863e03182f04117cc49902b30426c5 Author: Linda (Jia Wen) Li Date: 2

[PathwayCommons/factoid] 4d2f9d: successfully retrieve document instances from db

Branch: refs/heads/iss1156-neo4j-addalldocumentstoneo4j Home: https://github.com/PathwayCommons/factoid Commit: 4d2f9d68f77298d595197a120ce14ac62c2220ab https://github.com/PathwayCommons/factoid/commit/4d2f9d68f77298d595197a120ce14ac62c2220ab Author: Linda (Jia Wen) Li Date: 2

[PathwayCommons/factoid] b5a811: comment out bug and add quick fix to function not ...

Branch: refs/heads/iss1156-neo4j-addalldocumentstoneo4j Home: https://github.com/PathwayCommons/factoid Commit: b5a8112d326cfbb334368e91a09a6ab18dd67c21 https://github.com/PathwayCommons/factoid/commit/b5a8112d326cfbb334368e91a09a6ab18dd67c21 Author: Linda (Jia Wen) Li Date: 2

[PathwayCommons/factoid] 1c37bd: beginning, unfixed bug on line 181

Branch: refs/heads/iss1156-neo4j-addalldocumentstoneo4j Home: https://github.com/PathwayCommons/factoid Commit: 1c37bddb86af8dd629d7c1a00f39a2904a8cdd1b https://github.com/PathwayCommons/factoid/commit/1c37bddb86af8dd629d7c1a00f39a2904a8cdd1b Author: Linda (Jia Wen) Li Date: 2

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 7543c2: test cases 3, 4 and 6 added

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: 7543c257bf99d748bfe2f1ff4974d00b0353a238 https://github.com/PathwayCommons/factoid/commit/7543c257bf99d748bfe2f1ff4974d00b0353a238 Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid] eea202: test case 2 added

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: eea202f88eeacae8b4c960fdab1dd90edd269cf1 https://github.com/PathwayCommons/factoid/commit/eea202f88eeacae8b4c960fdab1dd90edd269cf1 Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid] 226c48: test case 1 and test case 5 added

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: 226c484c6f79d1a1cd3124620b3a8f573e9ebf63 https://github.com/PathwayCommons/factoid/commit/226c484c6f79d1a1cd3124620b3a8f573e9ebf63 Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid] e9f9db: change Molecule to Entity

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: e9f9db5357971557f2f1c29c85fa7cde4b2cbeda https://github.com/PathwayCommons/factoid/commit/e9f9db5357971557f2f1c29c85fa7cde4b2cbeda Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid] ad4967: made neighbourhoodWithoutComplexes(id)

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: ad4967c1cd7df4346c88517c18ce3e1496bb48e5 https://github.com/PathwayCommons/factoid/commit/ad4967c1cd7df4346c88517c18ce3e1496bb48e5 Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid] f21fbc: remove old complex edge function

Branch: refs/heads/iss1153-neo4j-filter-complexes Home: https://github.com/PathwayCommons/factoid Commit: f21fbc211d8baacc05796e777c8c9dc99b54aed0 https://github.com/PathwayCommons/factoid/commit/f21fbc211d8baacc05796e777c8c9dc99b54aed0 Author: Linda (Jia Wen) Li Date: 2023-03

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 7546a8: put json files in separate folder within neo4j-test

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 7546a833226ff98cad770f1bb878bede3c6f2105 https://github.com/PathwayCommons/factoid/commit/7546a833226ff98cad770f1bb878bede3c6f2105 Author: Linda (Jia Wen) Li Date: 2023-03-23 (Thu, 23 Mar 2023)

[PathwayCommons/factoid] 5338e0: rename getComplexEdge to getEdgeByIdAndEndpoints

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 5338e07c0bae14821771b259a9e8519ce9211a2a https://github.com/PathwayCommons/factoid/commit/5338e07c0bae14821771b259a9e8519ce9211a2a Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 457264: fixed bug in addDocumentToNeo4j, test case 5 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 457264b614b559df62e8365e63ebbcaaca2ac36e https://github.com/PathwayCommons/factoid/commit/457264b614b559df62e8365e63ebbcaaca2ac36e Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] fa5eb7: fixed bug with loop conditionals, test case 5 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: fa5eb715aa8b9c47a64b9376c1e9cc975f7b8a7d https://github.com/PathwayCommons/factoid/commit/fa5eb715aa8b9c47a64b9376c1e9cc975f7b8a7d Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 8346f0: test case 4 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 8346f0dc015fceebf8238cd3b11bfb69a8ab9c91 https://github.com/PathwayCommons/factoid/commit/8346f0dc015fceebf8238cd3b11bfb69a8ab9c91 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] b4c877: test case 3 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: b4c8a6c770b1c29f7ed39a09aca0e69a2e7e https://github.com/PathwayCommons/factoid/commit/b4c8a6c770b1c29f7ed39a09aca0e69a2e7e Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] e5bbaf: test case 4 changed

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: e5bbaf39915ef55837b5877aa41c83a532e39696 https://github.com/PathwayCommons/factoid/commit/e5bbaf39915ef55837b5877aa41c83a532e39696 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] d3a29e: test case 3 and 4 changed

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: d3a29e0bedba6d5324281b98f232b1b47b12d23e https://github.com/PathwayCommons/factoid/commit/d3a29e0bedba6d5324281b98f232b1b47b12d23e Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 2620ae: test case 2 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 2620ae97fb4e88c68495c967bf1aa424af1fcd94 https://github.com/PathwayCommons/factoid/commit/2620ae97fb4e88c68495c967bf1aa424af1fcd94 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 18e505: add testing function getComplexEdge

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 18e5054891f40a1cfd0e9c276d45e620588fb292 https://github.com/PathwayCommons/factoid/commit/18e5054891f40a1cfd0e9c276d45e620588fb292 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 6021b0: test case 2 changed

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 6021b03a05a3068897b29858166465f63f88f189 https://github.com/PathwayCommons/factoid/commit/6021b03a05a3068897b29858166465f63f88f189 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] f8b02a: test case 1 added

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: f8b02a9f0d08e5930ffcdb45bcfcd5ba6d08828b https://github.com/PathwayCommons/factoid/commit/f8b02a9f0d08e5930ffcdb45bcfcd5ba6d08828b Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] b532f3: fixed bug for first test case

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: b532f35bedf050ef826a869f7f19bda8174fe2a6 https://github.com/PathwayCommons/factoid/commit/b532f35bedf050ef826a869f7f19bda8174fe2a6 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 751d9c: begin test suite, bug discovered for test 1

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 751d9ceffa917e48ebee7c84153109279d47298c https://github.com/PathwayCommons/factoid/commit/751d9ceffa917e48ebee7c84153109279d47298c Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 102476: make all complex test json files

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 1024761b6f2c37f5fd3a55e7a9daf23e05373edc https://github.com/PathwayCommons/factoid/commit/1024761b6f2c37f5fd3a55e7a9daf23e05373edc Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid] 7546a8: put json files in separate folder within neo4j-test

Branch: refs/heads/iss1149-neo4j-testing-complexes Home: https://github.com/PathwayCommons/factoid Commit: 7546a833226ff98cad770f1bb878bede3c6f2105 https://github.com/PathwayCommons/factoid/commit/7546a833226ff98cad770f1bb878bede3c6f2105 Author: Linda (Jia Wen) Li Date: 2023-0

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] bd0854: add participantTypes field to edges, make 'ToDo's

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: bd085411f956768ffeae67a884fa926072946190 https://github.com/PathwayCommons/factoid/commit/bd085411f956768ffeae67a884fa926072946190 Author: Linda (Jia Wen) Li Date: 2023-03-17 (Fri, 17 Mar 2023)

[PathwayCommons/factoid] a9c805: change complex nested loop indexing (more readable)

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: a9c80528d3f67088f44dc591ed43ea307e1adb97 https://github.com/PathwayCommons/factoid/commit/a9c80528d3f67088f44dc591ed43ea307e1adb97 Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] a9eb29: replace 'N/A' with ''

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: a9eb2989290f31b0479d12b0d962692d13a9eec2 https://github.com/PathwayCommons/factoid/commit/a9eb2989290f31b0479d12b0d962692d13a9eec2 Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] 229eee: .element() typo

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: 229eee64d954558883feb653d339b1927217ec6a https://github.com/PathwayCommons/factoid/commit/229eee64d954558883feb653d339b1927217ec6a Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] daa489: rename searchByMoleculeId to neighbourhood

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: daa4894457e30621f8cbd3e88749565a42cdc092 https://github.com/PathwayCommons/factoid/commit/daa4894457e30621f8cbd3e88749565a42cdc092 Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] 5511c8: change type:'complex' to type:'binding'

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: 5511c839a1bac344f0c0d8636f14533d2563ba7d https://github.com/PathwayCommons/factoid/commit/5511c839a1bac344f0c0d8636f14533d2563ba7d Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] 95e242: delete complexEdgesMaker, integrate into addDocume...

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: 95e2422f0ccd47d91db498c7f93702a829ae35de https://github.com/PathwayCommons/factoid/commit/95e2422f0ccd47d91db498c7f93702a829ae35de Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] 2e6e13: fix bug with complexEdgesMaker

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: 2e6e13fc20399e8511e7b27eeb7727443bf5398a https://github.com/PathwayCommons/factoid/commit/2e6e13fc20399e8511e7b27eeb7727443bf5398a Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] b52e3c: typo

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: b52e3c4471df3a12e3931e85e3b0cb388cd6705a https://github.com/PathwayCommons/factoid/commit/b52e3c4471df3a12e3931e85e3b0cb388cd6705a Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] 8af40f: fix bug in complexEdgesMaker

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: 8af40ffbf23b4ef31b339f6be3d1a26ebf3caa47 https://github.com/PathwayCommons/factoid/commit/8af40ffbf23b4ef31b339f6be3d1a26ebf3caa47 Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

[PathwayCommons/factoid] cddda9: Handle interactions between 2 complexes (untested)

Branch: refs/heads/iss1146-neo4j-complexes Home: https://github.com/PathwayCommons/factoid Commit: cddda96316a89f801967ca653152088f66d0c878 https://github.com/PathwayCommons/factoid/commit/cddda96316a89f801967ca653152088f66d0c878 Author: Linda (Jia Wen) Li Date: 2023-03-22 (We

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