[cytoscape/cytoscape-gui-distribution] e792c2: applied same hack fix to karaf file that was appli...

Branch: refs/heads/feature/javafx_mac_aarch64 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: e792c22882fc1ef7c4da385411baf91462b5 https://github.com/cytoscape/cytoscape-gui-distribution/commit/e792c22882fc1ef7c4da385411baf91462b5 Author: Chris Churas

[cytoscape/cytoscape-gui-distribution] 442d90: Add JavaFX mac-aarch64

Branch: refs/heads/feature/javafx_mac_aarch64 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 442d90e721abd62b948b415312a8cf8aa90ff46f https://github.com/cytoscape/cytoscape-gui-distribution/commit/442d90e721abd62b948b415312a8cf8aa90ff46f Author: Mike Kucera

[cytoscape/cytoscape-impl] 1515fe: Use events to update column style display.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 1515fee4aa91e4e2ee8563f1e0d8c9ae4a1d8d4f https://github.com/cytoscape/cytoscape-impl/commit/1515fee4aa91e4e2ee8563f1e0d8c9ae4a1d8d4f Author: Mike Kucera Date: 2022-08-08 (Mon, 08 Aug 2022)

[cytoscape/cytoscape-api] 727138: Simplify event

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 727138a7e391a613a558d70ff3e5d83a0ac2f4ec https://github.com/cytoscape/cytoscape-api/commit/727138a7e391a613a558d70ff3e5d83a0ac2f4ec Author: Mike Kucera Date: 2022-08-08 (Mon, 08 Aug 2022) Ch

[cytoscape/cytoscape-impl] 34e658: CSD-788 "file" return encoded using Gson

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 34e6586a7fff7755ccb82972e5acc15afcd57f71 https://github.com/cytoscape/cytoscape-impl/commit/34e6586a7fff7755ccb82972e5acc15afcd57f71 Author: Mike Kucera Date: 2022-08-08 (Mon, 08 Aug 2022)

[cytoscape/cytoscape-impl] 716f01: CYTOSCAPE-11310 Zoom to mouse pointer

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 716f01b132ab746a643e039b8dd69530e8cb0d8c https://github.com/cytoscape/cytoscape-impl/commit/716f01b132ab746a643e039b8dd69530e8cb0d8c Author: Mike Kucera Date: 2022-07-29 (Fri, 29 Jul 2022)

[cytoscape/cytoscape-impl] 80d237: CSD-788 "file" return from view export {jpg, pdf, ...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 80d23771592cf689752524ad3764f0ed0b490c69 https://github.com/cytoscape/cytoscape-impl/commit/80d23771592cf689752524ad3764f0ed0b490c69 Author: Mike Kucera Date: 2022-07-28 (Thu, 28 Jul 2022)

[cytoscape/cytoscape-impl] 13ee76: Properly reset the TableVisualMappingManager on Fi...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 13ee76ec35a7425cf6bd803f0df3d773de880d47 https://github.com/cytoscape/cytoscape-impl/commit/13ee76ec35a7425cf6bd803f0df3d773de880d47 Author: Mike Kucera Date: 2022-07-27 (Wed, 27 Jul 2022)

[cytoscape/cytoscape-impl] 69e812: Fix some minor bugs with the Column tab in vizmapper.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 69e81266fb4255fd494bc566d21e89486303daa8 https://github.com/cytoscape/cytoscape-impl/commit/69e81266fb4255fd494bc566d21e89486303daa8 Author: Mike Kucera Date: 2022-07-27 (Wed, 27 Jul 2022)

[cytoscape/cytoscape-impl] 0cb705: Remember formula entered into formula builder.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 0cb705d2d53a804d8f221930c9b79fb75f92179c https://github.com/cytoscape/cytoscape-impl/commit/0cb705d2d53a804d8f221930c9b79fb75f92179c Author: Mike Kucera Date: 2022-07-19 (Tue, 19 Jul 2022)

[cytoscape/cytoscape-impl] 025538: Disable Function Builder button when cell editor i...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 025538980e6b5ad726b0d9ad7167360c72bedeb1 https://github.com/cytoscape/cytoscape-impl/commit/025538980e6b5ad726b0d9ad7167360c72bedeb1 Author: Mike Kucera Date: 2022-07-18 (Mon, 18 Jul 2022)

[cytoscape/cytoscape-impl] d17dbe: CYTOSCAPE-12978 Fix bogus errors from TableVisualM...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: d17dbef6b5c17a2616917571b55b074c1a4464f7 https://github.com/cytoscape/cytoscape-impl/commit/d17dbef6b5c17a2616917571b55b074c1a4464f7 Author: Mike Kucera Date: 2022-07-13 (Wed, 13 Jul 2022)

[cytoscape/cytoscape-impl] 77352f: CYTOSCAPE-12978 Fix error opening Font Face dialog...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 77352feb38aaa4cc8a5ab9ebb483c6371c013be7 https://github.com/cytoscape/cytoscape-impl/commit/77352feb38aaa4cc8a5ab9ebb483c6371c013be7 Author: Mike Kucera Date: 2022-07-13 (Wed, 13 Jul 2022)

[cytoscape/cytoscape-impl] 27efde: CSD-783 Add deprecation warning to 'view export' c...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 27efde3f29f3c28ba96516fe4af5b10257c67d68 https://github.com/cytoscape/cytoscape-impl/commit/27efde3f29f3c28ba96516fe4af5b10257c67d68 Author: Mike Kucera Date: 2022-07-11 (Mon, 11 Jul 2022)

[cytoscape/cytoscape-impl] b78383: CYTOSCAPE-12978 JTable based ColumnStylePicker

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: b7838395dceaca2f7e9524a28b45c5f81ecfd7b3 https://github.com/cytoscape/cytoscape-impl/commit/b7838395dceaca2f7e9524a28b45c5f81ecfd7b3 Author: Mike Kucera Date: 2022-05-16 (Mon, 16 May 2022)

[cytoscape/cytoscape-api] 6b7d46: CYTOSCAPE-12978 New API for "Associated" column st...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 6b7d46db8f77b9de6a6b59d94e14f2410bf92e99 https://github.com/cytoscape/cytoscape-api/commit/6b7d46db8f77b9de6a6b59d94e14f2410bf92e99 Author: Mike Kucera Date: 2022-06-15 (Wed, 15 Jun 2022) Ch

[cytoscape/cytoscape-impl] bf7885: CYTOSCAPE-12978 Update warning icons.

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: bf788511611dabfadcaf8027b467e936c13f4782 https://github.com/cytoscape/cytoscape-impl/commit/bf788511611dabfadcaf8027b467e936c13f4782 Author: Mike Kucera Date: 2022-06-27 (

[cytoscape/cytoscape-impl] 406ab4: CYTOSCAPE-12978 Minor cleanup.

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: 406ab4fa7da9759810d7f171a88c2cfcbe2a21ba https://github.com/cytoscape/cytoscape-impl/commit/406ab4fa7da9759810d7f171a88c2cfcbe2a21ba Author: Mike Kucera Date: 2022-06-20 (

[cytoscape/cytoscape-impl] 6f4573: CYTOSCAPE-12928 Select Edges Between Selected Nodes

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: 6f4573a158e51e7e7bdc539d3e2da7a8ce59e56b https://github.com/cytoscape/cytoscape-impl/commit/6f4573a158e51e7e7bdc539d3e2da7a8ce59e56b Author: Yihang Xin Date: 2022-05-16 (M

[cytoscape/cytoscape-api] 70153f: CYTOSCAPE-12928 Select Edges Between Selected Nodes

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-api Commit: 70153f3e84a5da22d358185def69824a85e72531 https://github.com/cytoscape/cytoscape-api/commit/70153f3e84a5da22d358185def69824a85e72531 Author: Yihang Xin Date: 2022-05-16 (Mon

[cytoscape/cytoscape-api] 6b7d46: CYTOSCAPE-12978 New API for "Associated" column st...

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-api Commit: 6b7d46db8f77b9de6a6b59d94e14f2410bf92e99 https://github.com/cytoscape/cytoscape-api/commit/6b7d46db8f77b9de6a6b59d94e14f2410bf92e99 Author: Mike Kucera Date: 2022-06-15 (We

[cytoscape/cytoscape-impl] 9d3479: CYTOSCAPE-12978 Add split pane to style panel.

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: 9d347962665fb3d73f4fba8565302a7eb6046fe8 https://github.com/cytoscape/cytoscape-impl/commit/9d347962665fb3d73f4fba8565302a7eb6046fe8 Author: Mike Kucera Date: 2022-06-14 (

[cytoscape/cytoscape-impl] accd61: CYTOSCAPE-12978 Remove automatically created style...

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: accd6137700cddc7da8bec20a01a1a53ffb41b4e https://github.com/cytoscape/cytoscape-impl/commit/accd6137700cddc7da8bec20a01a1a53ffb41b4e Author: Mike Kucera Date: 2022-06-14 (

[cytoscape/cytoscape-impl] b78383: CYTOSCAPE-12978 JTable based ColumnStylePicker

Branch: refs/heads/feature/network_table_styles Home: https://github.com/cytoscape/cytoscape-impl Commit: b7838395dceaca2f7e9524a28b45c5f81ecfd7b3 https://github.com/cytoscape/cytoscape-impl/commit/b7838395dceaca2f7e9524a28b45c5f81ecfd7b3 Author: Mike Kucera Date: 2022-05-16 (

[cytoscape/cytoscape.js] f3f421: Update bundled beziers when setting display: none

Branch: refs/heads/fix/bezier-display-none Home: https://github.com/cytoscape/cytoscape.js Commit: f3f4217789e1d5ecbacd4236f31c69f83863e8d4 https://github.com/cytoscape/cytoscape.js/commit/f3f4217789e1d5ecbacd4236f31c69f83863e8d4 Author: Mike Kucera Date: 2022-05-11 (Wed, 11 M

[cytoscape/cytoscape-gui-distribution] d24303: Update install4j config to remove Info.plist modif...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: d24303fa614c2f329ce88fd129eb61526ee94218 https://github.com/cytoscape/cytoscape-gui-distribution/commit/d24303fa614c2f329ce88fd129eb61526ee94218 Author: Mike Kucera Date: 2022-05-0

[cytoscape/cytoscape-gui-distribution] 29d5ca: Update install4j config to move 'java.io.tmpdir' t...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 29d5caec610d1045af0237eb80e8d22fb86559a6 https://github.com/cytoscape/cytoscape-gui-distribution/commit/29d5caec610d1045af0237eb80e8d22fb86559a6 Author: Mike Kucera Date: 2022-05-0

[cytoscape/cytoscape-impl] 59fa56: Make sure Font loading exception doesn't get swall...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 59fa568f84477b591cb8305c89bdd84bc7645fe8 https://github.com/cytoscape/cytoscape-impl/commit/59fa568f84477b591cb8305c89bdd84bc7645fe8 Author: Mike Kucera Date: 2022-05-04 (Wed, 04 May 2022)

[cytoscape/cytoscape-impl] 6ec20b: CYTOSCAPE-12393 Visual property for node/edge labe...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 6ec20baa7597f9abf0c76a61dfd0267face5538e https://github.com/cytoscape/cytoscape-impl/commit/6ec20baa7597f9abf0c76a61dfd0267face5538e Author: Mike Kucera Date: 2022-04-28 (Thu, 28 Apr 2022)

[cytoscape/cytoscape-api] 5e750b: CYTOSCAPE-12393 Visual property for node/edge labe...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 5e750b7c3c73d9751e9e7b0647f33c222a50d36d https://github.com/cytoscape/cytoscape-api/commit/5e750b7c3c73d9751e9e7b0647f33c222a50d36d Author: Mike Kucera Date: 2022-04-28 (Thu, 28 Apr 2022) Ch

[cytoscape/cytoscape-impl] 7efab0: CYTOSCAPE-12977 New commands for view export formats.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 7efab0e233aad1fa775ca6ab5fef1b025684537c https://github.com/cytoscape/cytoscape-impl/commit/7efab0e233aad1fa775ca6ab5fef1b025684537c Author: Mike Kucera Date: 2022-04-28 (Thu, 28 Apr 2022)

[cytoscape/cytoscape-impl] a078d8: CYTOSCAPE-12588 Return of node selection lasso.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: a078d80b727559d87f06cefa0322e03a94dbe98d https://github.com/cytoscape/cytoscape-impl/commit/a078d80b727559d87f06cefa0322e03a94dbe98d Author: Mike Kucera Date: 2022-04-25 (Mon, 25 Apr 2022)

[cytoscape/cytoscape-impl] 4c648e: Fix jitteryness of group node resizing.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 4c648ed860fe26ff50c634fbf83d31d92f285b40 https://github.com/cytoscape/cytoscape-impl/commit/4c648ed860fe26ff50c634fbf83d31d92f285b40 Author: Mike Kucera Date: 2022-04-21 (Thu, 21 Apr 2022)

[cytoscape/cytoscape-impl] 02a890: CYTOSCAPE-12957 Don't clear EDGE_BEND when applyin...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 02a8900959e239daec5597263782b7422c404440 https://github.com/cytoscape/cytoscape-impl/commit/02a8900959e239daec5597263782b7422c404440 Author: Mike Kucera Date: 2022-04-21 (Thu, 21 Apr 2022)

[cytoscape/cytoscape-gui-distribution] 3b2a5f: Temp fix for missing ebi repository.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 3b2a5f68384b0512ded2311dd7304640892bd766 https://github.com/cytoscape/cytoscape-gui-distribution/commit/3b2a5f68384b0512ded2311dd7304640892bd766 Author: Mike Kucera Date: 2022-04-1

[cytoscape/cytoscape-api] 56823b: Minor update to Javadocs.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 56823bb65af95ba31c92ffbdcbb10c44f4b84b00 https://github.com/cytoscape/cytoscape-api/commit/56823bb65af95ba31c92ffbdcbb10c44f4b84b00 Author: Mike Kucera Date: 2022-04-11 (Mon, 11 Apr 2022) Ch

[cytoscape/cytoscape-impl] 33639a: CYTOSCAPE-12914 Copy/paste of annotations supports...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 33639a554a2ddec1f902174de661d818b258b2d9 https://github.com/cytoscape/cytoscape-impl/commit/33639a554a2ddec1f902174de661d818b258b2d9 Author: Mike Kucera Date: 2022-04-11 (Mon, 11 Apr 2022)

[cytoscape/cytoscape-impl] 4d1078: CYTOSCAPE-12950 Handle mapping column exists but i...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 4d1078b1b5c90652b48e620b4688e2d679dc494d https://github.com/cytoscape/cytoscape-impl/commit/4d1078b1b5c90652b48e620b4688e2d679dc494d Author: Mike Kucera Date: 2022-04-06 (Wed, 06 Apr 2022)

[cytoscape/cytoscape-impl] 060964: # WARNING: head commit changed in the meantime

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 06096466c0223f95b76e72ffb93b19934333ecb1 https://github.com/cytoscape/cytoscape-impl/commit/06096466c0223f95b76e72ffb93b19934333ecb1 Author: Mike Kucera Date: 2022-04-06 (Wed, 06 Apr 2022)

[cytoscape/cytoscape-impl] 490e3d: CYTOSCAPE-12960 Add 'handleEquations' parameter to...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 490e3d5603e76eda812b800adc253c425841a01b https://github.com/cytoscape/cytoscape-impl/commit/490e3d5603e76eda812b800adc253c425841a01b Author: Mike Kucera Date: 2022-04-05 (Tue, 05 Apr 2022)

[cytoscape/cytoscape-impl] 589ab9: CYTOSCAPE-12961 Improve network auto naming.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 589ab913a4ee17be1d481a0b29635efedcc63385 https://github.com/cytoscape/cytoscape-impl/commit/589ab913a4ee17be1d481a0b29635efedcc63385 Author: Mike Kucera Date: 2022-04-05 (Tue, 05 Apr 2022)

[cytoscape/cytoscape-impl] ae2971: Minor refactoring.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: ae2971c1ab34edab6a212579276a4e657b722726 https://github.com/cytoscape/cytoscape-impl/commit/ae2971c1ab34edab6a212579276a4e657b722726 Author: Mike Kucera Date: 2022-04-05 (Tue, 05 Apr 2022)

[cytoscape/cytoscape-impl] 74d65b: CYTOSCAPE-12964 Image export uses high detail, but...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 74d65bde004799ee4c9dd90a7ac0db49b961a2a9 https://github.com/cytoscape/cytoscape-impl/commit/74d65bde004799ee4c9dd90a7ac0db49b961a2a9 Author: Mike Kucera Date: 2022-03-31 (Thu, 31 Mar 2022)

[cytoscape/cytoscape-impl] 816be9: CYTOSCAPE-12382 Ensure PDF export preserves italic...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 816be92a63789732357811c2cbebb679e86e7cad https://github.com/cytoscape/cytoscape-impl/commit/816be92a63789732357811c2cbebb679e86e7cad Author: Mike Kucera Date: 2022-03-29 (Tue, 29 Mar 2022)

[cytoscape/cytoscape-impl] 33befe: CYTOSCAPE-12926 Fix custom graphics size when node...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 33befee0384dea74de26f5a0d04b003dc023e463 https://github.com/cytoscape/cytoscape-impl/commit/33befee0384dea74de26f5a0d04b003dc023e463 Author: Mike Kucera Date: 2022-03-23 (Wed, 23 Mar 2022)

[cytoscape/cytoscape-impl] 59af0f: CYTOSCAPE-12964 Add 'high detail' option to image ...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 59af0f5aee5c5572d55db798067d3d89d67c623e https://github.com/cytoscape/cytoscape-impl/commit/59af0f5aee5c5572d55db798067d3d89d67c623e Author: Mike Kucera Date: 2022-03-23 (Wed, 23 Mar 2022)

[cytoscape/cytoscape-api] 5471fd: CYTOSCAPE-12964 Add RenderingEngine.printCanvas(Gr...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 5471fd18021c1370d3771cb3c92e3320ca770922 https://github.com/cytoscape/cytoscape-api/commit/5471fd18021c1370d3771cb3c92e3320ca770922 Author: Mike Kucera Date: 2022-03-23 (Wed, 23 Mar 2022) Ch

[cytoscape/cytoscape-gui-distribution] f1dde4: Update windows installer with java 17 bundle.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: f1dde4b129f55495d3e5eb1b320d434485ffe2eb https://github.com/cytoscape/cytoscape-gui-distribution/commit/f1dde4b129f55495d3e5eb1b320d434485ffe2eb Author: Mike Kucera Date: 2022-03-2

[cytoscape/cytoscape-gui-distribution] 926ecd: CYTOSCAPE-12963 Delete log files after 30 days.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 926ecd948d99f5a3085dcdb12ffe3c9fd791e026 https://github.com/cytoscape/cytoscape-gui-distribution/commit/926ecd948d99f5a3085dcdb12ffe3c9fd791e026 Author: Mike Kucera Date: 2022-03-2

[cytoscape/cytoscape-impl] 84a58e: CYTOSCAPE-12924 Fix layout settings "Reset Default...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 84a58e85aca1c79e885b41ef2cc5c8821f648edf https://github.com/cytoscape/cytoscape-impl/commit/84a58e85aca1c79e885b41ef2cc5c8821f648edf Author: Mike Kucera Date: 2022-03-18 (Fri, 18 Mar 2022)

[cytoscape/cytoscape-impl] c90434: CYTOSCAPE-12956 Properly clear tooltip from InputH...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: c9043420dc3ac609553f7cfb7aaa35e7add95408 https://github.com/cytoscape/cytoscape-impl/commit/c9043420dc3ac609553f7cfb7aaa35e7add95408 Author: Mike Kucera Date: 2022-03-18 (Fri, 18 Mar 2022)

[cytoscape/cytoscape-impl] 398d71: Put a search icon in the table browser.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 398d714cea6a3a91d52d7f35bbc8d941f1754510 https://github.com/cytoscape/cytoscape-impl/commit/398d714cea6a3a91d52d7f35bbc8d941f1754510 Author: Mike Kucera Date: 2022-03-16 (Wed, 16 Mar 2022)

[cytoscape/cytoscape-api] d166f9: Minor update to javadocs.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: d166f9630e9cef8cc01b6677c51f24e2ee9ad0db https://github.com/cytoscape/cytoscape-api/commit/d166f9630e9cef8cc01b6677c51f24e2ee9ad0db Author: Mike Kucera Date: 2022-03-16 (Wed, 16 Mar 2022) Ch

[cytoscape/cytoscape-impl] 2830b9: Remove search-impl.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 2830b973b1b30b6504b0eaa1659131e3c68466a2 https://github.com/cytoscape/cytoscape-impl/commit/2830b973b1b30b6504b0eaa1659131e3c68466a2 Author: Mike Kucera Date: 2022-03-16 (Wed, 16 Mar 2022)

[cytoscape/cytoscape-gui-distribution] 0693da: Remove search-impl from features. Remove lucene 3 ...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 0693daf6a6c7e49171688adfb3287effdf987821 https://github.com/cytoscape/cytoscape-gui-distribution/commit/0693daf6a6c7e49171688adfb3287effdf987821 Author: Mike Kucera Date: 2022-03-1

[cytoscape/cytoscape-gui-distribution] 2fe700: Add search2-impl bundle to features.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 2fe700ad8fe985f071acaae89574138c63cf705e https://github.com/cytoscape/cytoscape-gui-distribution/commit/2fe700ad8fe985f071acaae89574138c63cf705e Author: Mike Kucera Date: 2022-03-1

[cytoscape/cytoscape-impl] 4aea52: Start of search2-impl bundle.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 4aea5270210c73f6b856fb5ed18febb0155baf7e https://github.com/cytoscape/cytoscape-impl/commit/4aea5270210c73f6b856fb5ed18febb0155baf7e Author: Mike Kucera Date: 2022-01-25 (Tue, 25 Jan 2022)

[cytoscape/cytoscape-gui-distribution] 335a58: Upgrade to install4j 9.0.6. Support for mac aarch6...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 335a584aa8a01622113fd29a76715636251f31ba https://github.com/cytoscape/cytoscape-gui-distribution/commit/335a584aa8a01622113fd29a76715636251f31ba Author: Mike Kucera Date: 2022-03-1

[cytoscape/cytoscape-impl] 49b87e: Refactoring to allow individual tables to be searc...

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 49b87ea312aa7004ea1772d7e35288de0efab3d6 https://github.com/cytoscape/cytoscape-impl/commit/49b87ea312aa7004ea1772d7e35288de0efab3d6 Author: Mike Kucera Date: 2022-03-06 (Sun, 06 Mar 2

[cytoscape/cytoscape-impl] 78df36: Remove test sleep.

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 78df36bfad7f8c698e3e621b1bde075dd8cf5108 https://github.com/cytoscape/cytoscape-impl/commit/78df36bfad7f8c698e3e621b1bde075dd8cf5108 Author: Mike Kucera Date: 2022-03-01 (Tue, 01 Mar 2

[cytoscape/cytoscape-impl] c4d33f: Reindex when column deleted/renamed.

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: c4d33f389e3ba6b5cefc55228d8d6eb265ae90f0 https://github.com/cytoscape/cytoscape-impl/commit/c4d33f389e3ba6b5cefc55228d8d6eb265ae90f0 Author: Mike Kucera Date: 2022-02-24 (Thu, 24 Feb 2

[cytoscape/cytoscape-impl] 05a7a1: Handle adding and deleting of rows.

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 05a7a1b3d3ee92ca02d588724262d36a1757b602 https://github.com/cytoscape/cytoscape-impl/commit/05a7a1b3d3ee92ca02d588724262d36a1757b602 Author: Mike Kucera Date: 2022-02-23 (Wed, 23 Feb 2

[cytoscape/cytoscape-impl] 41a981: Use custom analyzer, use TextField.

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 41a981da8d584737f2c9fce41bee31224bae5b4a https://github.com/cytoscape/cytoscape-impl/commit/41a981da8d584737f2c9fce41bee31224bae5b4a Author: Mike Kucera Date: 2022-01-25 (Tue, 25 Jan 2

[cytoscape/cytoscape-impl] 4aea52: Start of search2-impl bundle.

Branch: refs/heads/feature/search2 Home: https://github.com/cytoscape/cytoscape-impl Commit: 4aea5270210c73f6b856fb5ed18febb0155baf7e https://github.com/cytoscape/cytoscape-impl/commit/4aea5270210c73f6b856fb5ed18febb0155baf7e Author: Mike Kucera Date: 2022-01-25 (Tue, 25 Jan 2

[cytoscape/cytoscape-gui-distribution] 9293ed: Update cy-rest to 3.12.3.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 9293ed6efd002923d7060ccb56f4f65cb52d04c2 https://github.com/cytoscape/cytoscape-gui-distribution/commit/9293ed6efd002923d7060ccb56f4f65cb52d04c2 Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 51ecdb: Revert changes to install4j for karaf 4.2.14, set ...

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 51ecdbbe90367eb5d6a5d60e9542928c748df369 https://github.com/cytoscape/cytoscape-gui-distribution/commit/51ecdbbe90367eb5d6a5d60e9542928c748df369 Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 2ae4ee: Fix typo in assembly pom.xml

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 2ae4ee06c841f26897d0e6988e17280d823573fa https://github.com/cytoscape/cytoscape-gui-distribution/commit/2ae4ee06c841f26897d0e6988e17280d823573fa Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 6a3f37: Set karaf back to 4.2.8, set pax-logging to 1.11.13.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 6a3f37158b4eec20431bd816ea08379da783f5c8 https://github.com/cytoscape/cytoscape-gui-distribution/commit/6a3f37158b4eec20431bd816ea08379da783f5c8 Author: Mike Kucera Date: 202

[cytoscape/cytoscape-parent] 6d4628: Set karaf back to 4.2.8, set pax-logging to 1.11.13

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-parent Commit: 6d46283166b867a1b624cb08e207a4994bccfdec https://github.com/cytoscape/cytoscape-parent/commit/6d46283166b867a1b624cb08e207a4994bccfdec Author: Mike Kucera Date: 2022-01-16 (Sun, 16 Jan

[cytoscape/cytoscape-gui-distribution] cff7f7: Update install4j config again.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: cff7f77a18f2b773bd0fea87be06eea4f038629b https://github.com/cytoscape/cytoscape-gui-distribution/commit/cff7f77a18f2b773bd0fea87be06eea4f038629b Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 51aa00: Update install4j config.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 51aa007cf6830e40eb0f6881694eece0dfe99640 https://github.com/cytoscape/cytoscape-gui-distribution/commit/51aa007cf6830e40eb0f6881694eece0dfe99640 Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 420e0a: Set cy-rest version to 3.12.3

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 420e0ac0c5807b2654f4a9edc72edac709bb86db https://github.com/cytoscape/cytoscape-gui-distribution/commit/420e0ac0c5807b2654f4a9edc72edac709bb86db Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] 08272c: Upgrade install4j version to 9.0.5.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 08272cabe8e6a8b2a656e4928ecb1e0530742223 https://github.com/cytoscape/cytoscape-gui-distribution/commit/08272cabe8e6a8b2a656e4928ecb1e0530742223 Author: Mike Kucera

[cytoscape/cytoscape-support] 882aa7: Update osgi dependency.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-support Commit: 882aa74552423af5ffac31ce3dee23ec73b972d4 https://github.com/cytoscape/cytoscape-support/commit/882aa74552423af5ffac31ce3dee23ec73b972d4 Author: Mike Kucera Date: 2021-11-04 (Thu, 04 Nov 202

[cytoscape/cytoscape-parent] a951c7: Set karaf version to 4.3.3.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-parent Commit: a951c7fab3cf231b0eff27f66e76c1ae335906da https://github.com/cytoscape/cytoscape-parent/commit/a951c7fab3cf231b0eff27f66e76c1ae335906da Author: Mike Kucera Date: 2021-11-03 (Wed, 03 Nov 2021)

[cytoscape/cytoscape-impl] d76f42: Update for karaf 4.3.3

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: d76f42fe5524108bf6ae139b6210eac2325df34d https://github.com/cytoscape/cytoscape-impl/commit/d76f42fe5524108bf6ae139b6210eac2325df34d Author: Mike Kucera Date: 2021-11-03 (Wed, 03 Nov 2021)

[cytoscape/cytoscape-gui-distribution] cc0fb7: Update to karaf 4.3.3.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: cc0fb75e4729b34b196875906336a58f729e3053 https://github.com/cytoscape/cytoscape-gui-distribution/commit/cc0fb75e4729b34b196875906336a58f729e3053 Author: Mike Kucera Date: 2021-11-0

[cytoscape/cytoscape-api] ab1c3e: Update osgi dependency.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: ab1c3e63a6950bc298ca048051c196502572d6ea https://github.com/cytoscape/cytoscape-api/commit/ab1c3e63a6950bc298ca048051c196502572d6ea Author: Mike Kucera Date: 2021-11-04 (Thu, 04 Nov 2021) Ch

[cytoscape/cytoscape-gui-distribution] 1d7508: Initial attempt to update install4j for Java 17.

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 1d75085a2beeab524e6592245d35684beeafa593 https://github.com/cytoscape/cytoscape-gui-distribution/commit/1d75085a2beeab524e6592245d35684beeafa593 Author: mkucera Date: 20

[cytoscape/cytoscape-gui-distribution] 96983c: Fix typos in install4j launcher args.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 96983c077b3d0f6d31d7d5fd9a75c1ddc6e7084e https://github.com/cytoscape/cytoscape-gui-distribution/commit/96983c077b3d0f6d31d7d5fd9a75c1ddc6e7084e Author: Mike Kucera

[cytoscape/cytoscape-gui-distribution] f8863c: Update launcher config in install4j for karaf 4.3.3.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: f8863c0880f99ca62311e52658a5df7dc0195711 https://github.com/cytoscape/cytoscape-gui-distribution/commit/f8863c0880f99ca62311e52658a5df7dc0195711 Author: Mike Kucera

[cytoscape/cytoscape-gui-distribution] af61df: Temporarily only enable packaging for macOS x64 an...

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: af61df95020416b1e1ad610d0e51bfe8e4096b63 https://github.com/cytoscape/cytoscape-gui-distribution/commit/af61df95020416b1e1ad610d0e51bfe8e4096b63 Author: Mike Kucera

[cytoscape/cytoscape-gui-distribution] 7e8d47: Update macos x86 jre bundle.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 7e8d4760e6646672eed92ec82de6c2042a8eef53 https://github.com/cytoscape/cytoscape-gui-distribution/commit/7e8d4760e6646672eed92ec82de6c2042a8eef53 Author: Mike Kucera

[cytoscape/cytoscape-gui-distribution] 24e062: Update macOS aarch64 bundle file name.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 24e062252f066375bed2da79b0afb4a9e50ee52d https://github.com/cytoscape/cytoscape-gui-distribution/commit/24e062252f066375bed2da79b0afb4a9e50ee52d Author: mkucera

[cytoscape/cytoscape-gui-distribution] 1d7508: Initial attempt to update install4j for Java 17.

Branch: refs/heads/feature/karaf4.3.3_install4j Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 1d75085a2beeab524e6592245d35684beeafa593 https://github.com/cytoscape/cytoscape-gui-distribution/commit/1d75085a2beeab524e6592245d35684beeafa593 Author: mkucera

[cytoscape/cytoscape-gui-distribution] 0e9e92: Fix javafx dependency.

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 0e9e9255af60276afbcb4223afc5a224e3cfac24 https://github.com/cytoscape/cytoscape-gui-distribution/commit/0e9e9255af60276afbcb4223afc5a224e3cfac24 Author: Mike Kucera Date:

[cytoscape/cytoscape-impl] a4ae26: CYTOSCAPE-12941 Fit Selected should ignore annotat...

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-impl Commit: a4ae2604dd964e431564a0b8bfd336c0df8edfe9 https://github.com/cytoscape/cytoscape-impl/commit/a4ae2604dd964e431564a0b8bfd336c0df8edfe9 Author: Mike Kucera Date: 2021-11-24 (Wed, 24 Nov 202

[cytoscape/cytoscape-impl] 3c5ac2: CYTOSCAPE-12941 Fit Selected should ignore annotat...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 3c5ac2248c369ee859c4601318ac32900cafe54c https://github.com/cytoscape/cytoscape-impl/commit/3c5ac2248c369ee859c4601318ac32900cafe54c Author: Mike Kucera Date: 2021-11-24 (Wed, 24 Nov 2021)

[cytoscape/cytoscape-impl] 6dbcec: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-impl Commit: 6dbcec3896e3a2cbfc6e55feaa2a81340c857748 https://github.com/cytoscape/cytoscape-impl/commit/6dbcec3896e3a2cbfc6e55feaa2a81340c857748 Author: Mike Kucera Date: 2021-11-23 (Tue, 23 Nov 202

[cytoscape/cytoscape-api] f45026: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-api Commit: f450263edafb4e5af4d07acf1d5fe455324fe851 https://github.com/cytoscape/cytoscape-api/commit/f450263edafb4e5af4d07acf1d5fe455324fe851 Author: Mike Kucera Date: 2021-11-23 (Tue, 23 Nov 2021)

[cytoscape/cytoscape-impl] 8a598f: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 8a598f6f3f87fc9ea3a5026511bfa79a8bc7a9a4 https://github.com/cytoscape/cytoscape-impl/commit/8a598f6f3f87fc9ea3a5026511bfa79a8bc7a9a4 Author: Mike Kucera Date: 2021-11-16 (Tue, 16 Nov 2021)

[cytoscape/cytoscape-api] e88061: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: e88061eaa82e3e71be16acfed5263277ed8e5b8a https://github.com/cytoscape/cytoscape-api/commit/e88061eaa82e3e71be16acfed5263277ed8e5b8a Author: Mike Kucera Date: 2021-11-16 (Tue, 16 Nov 2021) Ch

[cytoscape/cytoscape-impl] 8a598f: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/feature/clean_shutdown Home: https://github.com/cytoscape/cytoscape-impl Commit: 8a598f6f3f87fc9ea3a5026511bfa79a8bc7a9a4 https://github.com/cytoscape/cytoscape-impl/commit/8a598f6f3f87fc9ea3a5026511bfa79a8bc7a9a4 Author: Mike Kucera Date: 2021-11-16 (Tue, 1

[cytoscape/cytoscape-api] e88061: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.

Branch: refs/heads/feature/clean_shutdown Home: https://github.com/cytoscape/cytoscape-api Commit: e88061eaa82e3e71be16acfed5263277ed8e5b8a https://github.com/cytoscape/cytoscape-api/commit/e88061eaa82e3e71be16acfed5263277ed8e5b8a Author: Mike Kucera Date: 2021-11-16 (Tue, 16

[cytoscape/cytoscape-gui-distribution] 5ac298: CYTOSCAPE-12933 Update opencl-cycl and opencl-layo...

Branch: refs/heads/release/3.9.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 5ac298602b448318bd524302d8d157cff7143039 https://github.com/cytoscape/cytoscape-gui-distribution/commit/5ac298602b448318bd524302d8d157cff7143039 Author: Mike Kucera Date: 202

[cytoscape/cytoscape-gui-distribution] d2471c: CYTOSCAPE-12933 Update opencl-cycl and opencl-layo...

Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: d2471c3f6df845f5698ee8bc41736a86c26fee75 https://github.com/cytoscape/cytoscape-gui-distribution/commit/d2471c3f6df845f5698ee8bc41736a86c26fee75 Author: Mike Kucera Date: 2021-11-1

[cytoscape/cytoscape-impl] c4dea4: CYTOSCAPE-12934 Fix COUNT() and update LEN() to wo...

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-impl Commit: c4dea4fa609206220175a6c75fc676e786da8dd8 https://github.com/cytoscape/cytoscape-impl/commit/c4dea4fa609206220175a6c75fc676e786da8dd8 Author: Mike Kucera Date: 2021-11-08 (Mon, 08 No

[cytoscape/cytoscape-support] 882aa7: Update osgi dependency.

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-support Commit: 882aa74552423af5ffac31ce3dee23ec73b972d4 https://github.com/cytoscape/cytoscape-support/commit/882aa74552423af5ffac31ce3dee23ec73b972d4 Author: Mike Kucera Date: 2021-11-04 (Thu,

[cytoscape/cytoscape-parent] a951c7: Set karaf version to 4.3.3.

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-parent Commit: a951c7fab3cf231b0eff27f66e76c1ae335906da https://github.com/cytoscape/cytoscape-parent/commit/a951c7fab3cf231b0eff27f66e76c1ae335906da Author: Mike Kucera Date: 2021-11-03 (Wed, 0

[cytoscape/cytoscape-impl] d76f42: Update for karaf 4.3.3

Branch: refs/heads/feature/karaf4.3.3 Home: https://github.com/cytoscape/cytoscape-impl Commit: d76f42fe5524108bf6ae139b6210eac2325df34d https://github.com/cytoscape/cytoscape-impl/commit/d76f42fe5524108bf6ae139b6210eac2325df34d Author: Mike Kucera Date: 2021-11-03 (Wed, 03 No

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