@Timo: Thanks for the confimation and feedback.
I needed to do some adjustments to candi to get parmetis to run, but a
combination of https://github.com/dealii/candi/pull/33 and
https://github.com/dealii/candi/pull/32 should now be able to automatically
install deal.II on most Cray machines. @T
> I am not quite sure what is happening there (I do not have much experience
> with PETSc or MUMPS). As far as I can see MUMPS is not a separate package
> for deal.II but needs to be installed with PETSc.
corect.
> Maybe somebody else knows
> which options need to be added to the petsc.package fi
r ask your cluster support for
>> help. To me this does not look like a deal.II specific problem.
>> Another idea would be to check if /usr/bin/ld.gold is the linker you
>> should use, or if the build system picks up he wrong linker.
>> Best
>> Rene
>> Or
er.
> Best
> Rene
> Original message
> From: Tuanny Cajuhi
> Date: 6/3/2017 21:13 (GMT-05:00)
> To: dealii@googlegroups.com
> Subject: Re: [deal.II] Re: get errors when installing dealii on openSUSE
> Leap 42.1 by using candi
>
> Hi Rene,
Original message
From: Tuanny Cajuhi
Date: 6/3/2017 21:13 (GMT-05:00)
To: dealii@googlegroups.com
Subject: Re: [deal.II] Re: get errors when installing dealii on
openSUSE Leap 42.1 by using candi
Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this
:00) To:
dealii@googlegroups.com Subject: Re: [deal.II] Re: get errors when installing
dealii on openSUSE Leap 42.1 by using candi
Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this
point:
[100%] Building CXX object
source/numerics
Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this point:
[100%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_release.dir/vector_tools_rhs.cc.o
Linking CXX shared library ../lib/libdeal_II.g.so
/usr/bin/ld.gold: error: cannot find -lAtpSigHandler
/usr/b
Hi Rene,
thank you so much for sharing and for the explanation!!! I will try and
keep you updated :)
Best,
Tuanny
On 03.06.2017 20:14, Rene Gassmöller wrote:
I updated the github branch. The file is not longer at the old
position, instead take a look at: https://github.com/dealii/candi/pull
I updated the github branch. The file is not longer at the old position,
instead take a look at: https://github.com/dealii/candi/pull/31
Best
Rene
Am Freitag, 2. Juni 2017 14:55:45 UTC-4 schrieb Rene Gassmöller:
>
> Hi Tuanny,
>
> I happened to install deal.II on a Cray over the last days, and b
Hi Tuanny,
I happened to install deal.II on a Cray over the last days, and both
compiled everything by hand and (afterwards) decided to write a candi
script for it. Keep in mind that my instructions are for my specific
setting and application, i.e. I compile deal.II with the packages p4est,
tr
Thanks a lot, Bruno.
I will keep trying.
On Thu, Jun 1, 2017 at 5:50 PM, Bruno Turcksin
wrote:
> 2017-06-01 11:37 GMT-04:00 Tuanny Cajuhi :
> > You are right, thank you for the explanation. My code uses PetSc with
> MUMPS.
> > Just the output is done by Trilinos (the idea of joint_fe). In summar
2017-06-01 11:37 GMT-04:00 Tuanny Cajuhi :
> You are right, thank you for the explanation. My code uses PetSc with MUMPS.
> Just the output is done by Trilinos (the idea of joint_fe). In summary, I
> need to add p4est.
Download p4est, untar it, and try something like this:
./configure CC=cc CXX=CC
You are right, thank you for the explanation. My code uses PetSc with
MUMPS. Just the output is done by Trilinos (the idea of joint_fe). In
summary, I need to add p4est.
On Thu, Jun 1, 2017 at 5:29 PM, Bruno Turcksin
wrote:
> 2017-06-01 11:17 GMT-04:00 Tuanny Cajuhi :
> > I think numdiff and b
2017-06-01 11:17 GMT-04:00 Tuanny Cajuhi :
> I think numdiff and bzip2 are not available. From the list of available
> modules in https://www.hlrn.de/home/view/System3/CraySoftware . Petsc,
> Mumps, SuperLu, Trilinos are available. P4est I need to install.
But do you need all of these any way? Does
It seems that the Cray has PetSc, I am not sure about MUMPS and I would
need it.
>
> Well you don't need numdiff and you can load bzip2 from a module
> right? My question is more do you just need to install p4est and deal
> and you can load modules for everything else or do you need to install
>
2017-06-01 11:03 GMT-04:00 Tuanny Cajuhi :
> I tried to install using spack as you suggested in the previous message, but
> also got stuck. Basically I changed to module load cray-mpich/7.5.1, but
> then did not come further in (3) because I did not know how to change/what
> to change in packages.
>
>
> 1) ask your admin to install deal for you
>
I asked but it seems to not an option at the moment...
2) use spack that has support for cray but I don't think anyone has
> ever tried to use spack to install deal on a cray.
>
I tried to install using spack as you suggested in the previous mes
2017-06-01 10:40 GMT-04:00 Tuanny Cajuhi :
> I am on a cray (loaded module cray-mpich/7.5.1) and I don't know how to
> explicitly call one thing or the other
Oh that explains a lot. Not sure that candi is going to work then.
Cray don't work like other clusters :-/ One big difference is that
they do
I am on a cray (loaded module cray-mpich/7.5.1) and I don't know how to
explicitly call one thing or the other
On Thu, Jun 1, 2017 at 4:37 PM, Bruno Turcksin
wrote:
> 2017-06-01 10:34 GMT-04:00 Tuanny Cajuhi :
> > I did not find any of them... :/
> That's very strange how do you compile a mpi p
2017-06-01 10:34 GMT-04:00 Tuanny Cajuhi :
> I did not find any of them... :/
That's very strange how do you compile a mpi program by hand? Do you
have mpic++ ? Are you on a cray?
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.googl
I did not find any of them... :/
On Thu, Jun 1, 2017 at 4:29 PM, Bruno Turcksin
wrote:
> This is the problem "mpif77: command not found" Does mpif77 exist? If
> not, does mpif90 exist? If yes try export F77=mpif90
>
> 2017-06-01 10:21 GMT-04:00 Tuanny Cajuhi :
> > Hi Bruno,
> >
> > thank you.
>
This is the problem "mpif77: command not found" Does mpif77 exist? If
not, does mpif90 exist? If yes try export F77=mpif90
2017-06-01 10:21 GMT-04:00 Tuanny Cajuhi :
> Hi Bruno,
>
> thank you.
>
>> Are you using the same version of gfortran and gcc? Can you send the
>> whole config.log. I need to
Hi Bruno,
thank you.
Are you using the same version of gfortran and gcc? Can you send the
> whole config.log. I need to see what's the environment that p4est is
> using.
>
/opt/gcc/6.2.0/bin/gfortran
/opt/gcc/6.2.0/bin/gcc
The log is attached. Thank you for the help!
--
The deal.II project i
Tuanny,
2017-06-01 9:56 GMT-04:00 Tuanny Cajuhi :
> My next issue is p4est...
:-(
> Build FAST version in /home/h/niitcaju/deal.ii-candi/tmp/build/p4est-2.0/FAST
> configure: error: in
> `/home/h/niitcaju/deal.ii-candi/tmp/build/p4est-2.0/FAST':
> configure: error: Fortran 77 compiler cannot cre
...
and the 2 lines with 'error' in the config.log:
configure:4404: error: in
`/home/h/niitcaju/deal.ii-candi/tmp/build/p4est-2.0/FAST':
configure:4406: error: Fortran 77 compiler cannot create executables
On Thu, Jun 1, 2017 at 3:56 PM, Tuanny Cajuhi wrote:
> Hi Bruno,
>
> I was able to build
Hi Bruno,
I was able to build boost after loading the module to update Python. Thanks
a lot for the hint!
My next issue is p4est...
Unpacking p4est-2.0.tar.gz
Building p4est 2.0
CFLAGS_FAST: -O2
CFLAGS_DEBUG: -O0 -g
This script tries configure and build the p4est library.
Build FAST: /home/h/ni
Tuanny,
2017-06-01 3:53 GMT-04:00 Tuanny Cajuhi :
> Failure with exit status: 1
> Exit message: There was a problem building boost 1_63_0.
> (attached you can find all the messages from the terminal)
The problem is this "libs/python/src/numpy/dtype.cpp:61: error:
‘NPY_FLOAT16’ was not declared in
Dear Tuanny,
if you have zlib already installed on your system, *remove* the line with
zlib from the linux_cluster.platform,
it is located in
./candi/deal.II-toolchain/platforms/supported/linux_cluster.platform.
If you not have zlib installed, you should try to modify the package file
of zlib.
Tuanny,
we need to see the log file to know why it is failing. There is also a
good chane that zlib is already installed on the cluster so you could
comment once:zlib (line 21) in
candi/deal.II-toolchain/platforms/supported/linux_cluster.platform and
try again.
Best,
Bruno
2017-05-31 6:55 GMT-0
Dear all,
I am trying to install dealii on a cluster using
./candi.sh
--platform=./deal.II-toolchain/platforms/supported/linux_cluster.platform
and I get the same error as reported here:
*Building zlib 1.2.8 Compiler error reporting is too harsh for ./configure
(perhaps remove -Werror). **
Hi
On Thursday, June 9, 2016 at 4:49:30 AM UTC-4, Roc Wang wrote:
> * I tried to install zlib in openSUSE from repository, but, libz1
> providing zlib was found. The info is like:*
>
>
>
>
>
> *Loading repository data... Reading installed packages... 'zlib' not found
> in package names. Tryin
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