Bug#805230: RFS: python-pymummer (unstable)

Hi, team, I've finished the python-pymummer package. Would someone please upload to unstable? git+ssh://git.debian.org/git/debian-med/python-pymummer.git http://anonscm.debian.org/cgit/debian-med/python-pymummer.git Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http

Bug#804007: RFS: bcftools

Hi, team, I finished preparing the bcftools package: git+ssh://git.debian.org/git/debian-med/bcftools.git http://anonscm.debian.org/cgit/debian-med/bcftools.git Would someone upload to unstable, please? Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#804091: [Debian-med-packaging] Bug#804091: Artemis - Java 8 support

h Java 7 & 8 and upload as soon as I can. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#804091: Artemis - Java 8 support

ugh. > We would welcome any pull requests on GitHub which allow for Java 8 support. > Thanks for your prompt response. I'll see what we can do. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#804091: Artemis - Java 8 support

if 1. https://github.com/sanger-pathogens/Artemis/commit/9bc9e3bdcebef3e2267e9ff8e4dbfdecf87596c6 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name On الأربعاء 4 تشرين الثاني 2015 13:35, Emmanuel Bourg wrote: > Package: artemis > Version: 16.0.0+dfsg-1 > Severity: important &

Bug#803945: horae, artemis: error when trying to install together

The executable for artemis is called "art" even as shipped by upstream, so our artemis package provides /usr/bin/art and won't really benefit from being called /usr/bin/artemis. I can change the desktop file name to be art.desktop, but the name in the menu will still be Artemis. Will that be

Bug#804007: ITP: bcftools -- utilities for genomic variant calling and manipulating VCF and BCF files

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: bcftools Version : 1.2 Upstream Author : Petr Danecek, Shane McCarthy and John Marshall * URL : http://samtools.github.io/bcftools/ *

Bug#804007: pre-existing git repository for bcftools

, would it be alright if I discard the old repository on Alioth? That attempt targets a much older upstream release. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#803542: RFS: trnascan-se (NEW)

Hi, team, I've finished preparing a package for trnascan-se. Would someone please upload to unstable? git+ssh://git.debian.org/git/debian-med/trnascan-se.git http://anonscm.debian.org/cgit/debian-med/trnascan-se.git Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http

Bug#803542: ITP: trnascan-se -- detection of transfer RNA genes in genomic sequence

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: trnascan-se Version : 1.3.1 Upstream Author : Todd Lowe and colleagues * URL : http://lowelab.ucsc.edu/tRNAscan-SE *

Bug#802739: artemis_16.0.0+dfsg-1_amd64.changes REJECTED

you mind uploading again? The corrected version is in git now. Thanks, apologies, and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#798872: RFS: python-pbcommand (NEW)

Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#802041: RFS: python-avro

Would someone please upload to unstable? Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#802739: ITP: artemis -- genome browser and annotation tool

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: artemis Version : 16.0.0 Upstream Author : Genome Research Limited * URL :

Bug#734702: [Pkg-gridengine-devel] libdb dependency in v8.1.8

ve a patch in https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=734702 related to this transition that touches source/libs/spool/berkeleydb/sge_bdb.c I'm not sure if you want to integrate that (or already have) upstream. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#802041: ITP: python-avro -- Python interface to Apache Avro data serialization system

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Control: block 798872 by -1 * Package name: python-avro Version : 1.7.7 Upstream Author : Apache Software Foundation * URL : http://avro.apache.org *

Bug#794447: RFS: pbgenomicconsensus (NEW)

Hi, team, I finished preparing pbgenomicconsensus. Could someone please upload to unstable? http://anonscm.debian.org/cgit/debian-med/pbgenomicconsensus.git/ ssh://git.debian.org/git/debian-med/pbgenomicconsensus.git Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http

Bug#800794: [Debian-med-packaging] Bug#800794: python-pysam: FTBFS on multiple archs due to cython error

upload. I will note to check this out. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#795890: ori: Patches do not fix build on Hurd

the porting to Hurd. The packaging VCS is at http://anonscm.debian.org/cgit/users/afif-guest/ori.git Regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#800475: fai-server: fai-chboot -d and -e behavior varies depending on default PXE configuration

Package: fai-server Version: 4.3.1+deb8u1 Severity: minor Control: affects -1 debian-lan-config Dear Maintainer, The behavior of fai-chboot -d and -e depends on what the default PXE configuration is. the man-page fai-chboot(8) currently reads: -d Disable network booting for HOST.

Bug#749367: [Debian-med-packaging] Bug#749367: htslib: Is a solution available?

have access to a mips machine and their ticket was still open the last time I checked. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#799917: RM: samtools [armhf mips powerpc s390x] -- ROM; dependency not available

. The reason for the missing build is an issue with its dependency htslib that needs to be resolved upstream [1]. Thanks and regards Afif 1. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=749367 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#749367: htslib: Is a solution available?

1. https://github.com/samtools/htslib/commit/e8806c71f3408d2cbff8caa8df17eef848d33a02 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#749367: htslib: Is a solution available?

Hi, Has anyone tested the patch that was applied upstream [1] regarding this issue? I'm asking because the corresponding upstream ticket is still open and the commit message on the patch describes it as a "partial fix". I am not particularly interested in mips/mipsel, but this build failure is

Bug#799698: [Debian-med-packaging] samtools: Unknown command "faidx" on (kfreebsd-)i386

a renamed version of samtools.pl The fixed package is now in git and awaits upload. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#795619: RFP: python-cylp (initial packaging available)

obviously, Python2 packaging needs to be working first. Many thanks and regards Afif 1. http://bugs.debian.org/795619 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#798873: ITP: dazzdb -- database library for the dazzler assembler

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: dazzdb Version : 1.0 Upstream Author : Eugene W. Myers, Jr. * URL : https://github.com/thegenemyers/DAZZ_DB * License

Bug#798872: ITP: pbcommand -- common command-line interface for Pacific Biosciences analysis modules

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Control: block 797676 by -1 * Package name: pbcommand Version : 0.2.8 Upstream Author : Pacific Biosciences * URL :

Bug#797675: [Debian-med-packaging] Bug#797675: RFS: pbalign (NEW)

Hello, I've made the requested changes to pbalign. Could someone please sponsor? Thanks and regards Afif On الأحد 6 أيلول 2015 10:15, Afif Elghraoui wrote: > Hi, Andreas, > > On الأحد 6 أيلول 2015 06:27, Andreas Tille wrote: >> On Sun, Sep 06, 2015 at 02:13:12AM -0700, Afif

Bug#798218: ITP: pbseqlib -- libraries for analyzing Pacific Biosciences sequences

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Control: affects -1 blasr * Package name: pbseqlib Version : 0~20150702+git98a302a Upstream Author : Pacific Biosciences * URL

Bug#798220: ITP: pbbam -- Pacific Biosciences binary alignment/map (BAM) library

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team * Package name: pbbam Version : 0.1.0 Upstream Author : Pacific Biosciences * URL :

Bug#797675: RFS: pbalign (NEW)

also been renamed: git+ssh://git.debian.org/git/debian-med/pbalign.git Could someone sponsor this, please? Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#798066: autopkgtest: adt-run doesn't find multiarch-renamed Cython compiled libraries

Package: autopkgtest Version: 3.6jessie1 Severity: normal Tests fail on Python packages that have Cython-compiled modules. See, for example, the test log for python-cobra on DebCI [1]. The tests there fail with the error "solver not found", where the solver is the Cython-compiled module that has

Bug#794450: RFS: python-pbconsensuscore (NEW)

Hi, all, I've completed preparation of the python-pbconsensuscore package. Could someone sponsor this upload, please? The repository is at git+ssh://git.debian.org/git/debian-med/python-pbconsensuscore.git Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#797737: RFP: python-cram -- simple testing framework for command line applications

Package: wnpp Severity: wishlist Control: affects -1 blasr python-pbh5tools * Package name: python-cram Version : 0.6 Upstream Author : Brodie Rao * URL : https://github.com/brodie/cram * License : GPL Programming Lang: Python

Bug#796644: [Debian-med-packaging] Bug#796644: Please push current state if there is some local Git

effort. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#797352: ITP: daligner -- local alignment discovery between long nucleotide sequencing reads

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org * Package name: daligner Version : 1.0 Upstream Author : Eugene W. Myers, Jr. gene.my...@gmail.com * URL : http://github.com/thegenemyers/DALIGNER * License

Bug#796640: [Debian-med-packaging] ITP: mhap -- locality-sensitive hashing to detect long-read overlaps

-dependency jaligner enters the archive. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#795890: Update - preliminary patches created

Upstream has accepted to support GNU/kFreeBSD and GNU/Hurd [1] and I have created some patches to hopefully make Ori work on these platforms [2]. 1. https://mailman.stanford.edu/pipermail/orifs-devel/2015-August/000182.html 2. https://bitbucket.org/aelghraoui/ori/branch/compatibility -- Afif

Bug#796644: ITP: pbdagcon -- sequence consensus algorithm implementation based on directed acyclic graphs

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 787977 by -1 * Package name: pbdagcon Version : git1d12e13 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

Bug#796643: ITP: libuncommons-maths-java -- Random number generators, probability distributions, combinatorics and statistics for Java

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 395843 by -1 * Package name: libuncommons-maths-java Version : 1.2.3 Upstream Author : Daniel W. Dyer * URL : http://maths.uncommons.org *

Bug#796640: ITP: mhap -- locality-sensitive hashing to detect long-read overlaps

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 395843 by -1 * Package name: mhap Version : 1.6 Upstream Author : Sergey Koren ser...@umd.edu, Konstantin Berlin kber...@umd.edu * URL :

Bug#722226: Bug still affects stable release

This bug still affects the current stable release. Can the solution please be put through stable-updates as well? I hate to imagine if a user finally figures out how to file an RFP and then has reportbug crash in this way. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http

Bug#795890: ori: FTBFS on non-Linux: UNSUPPORTED OS

should support pthreads. (Certainly, all Debian architectures do.) Could you please take a look? Will do. Thanks for your report Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#795890: ori: FTBFS on non-Linux: UNSUPPORTED OS

should support pthreads. (Certainly, all Debian architectures do.) Could you please take a look? Will do. Thanks for your report Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#795619: RFP: python-cylp -- Python interface to COIN-OR linear and mixed-integer program solvers

Package: wnpp Severity: wishlist * Package name: python-cylp Version : 0.7.2 Upstream Author : Mehdi Towhidi mehdi.towh...@gerad.ca * URL : https://github.com/coin-or/CyLP * License : CPL Programming Lang: Python Description : Python interface to

Bug#787982: python-pbh5tools ready to upload

Hi, all, I've finished preparing the first version of the pbh5tools package. Could someone upload to unstable please? Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#794978: python-cobra: Package new release 0.4.0b2

Package: python-cobra Severity: normal Control: block -1 by 794511 Packaging of 0.4.0b2 is delayed until cython again becomes installable in unstable. -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org

Bug#794450: ITP: pb-consensuscore -- library of multiple nucleotide sequence consensus routines

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 794447 by -1 * Package name: pb-consensuscore Version : 1.0.0 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

Bug#794447: ITP: pb-genomicconsensus -- Pacific Biosciences variant and consensus caller

Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org Control: block 787977 by ! * Package name: pb-genomicconsensus Version : 1.0.0 Upstream Author : Pacific Biosciences dev...@pacificbiosciences.com * URL :

Bug#753485: mips/mipsel in samtools and pysam

/package.php?p=samtoolssuite=sid 3. https://buildd.debian.org/status/logs.php?pkg=htslibver=1.2.1-1arch=mips -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas

Bug#793659: RFS: ori/0.8.1+ds1-1 [ITP]

-Git sections in d/control. That's a good tip. I'll publish my repository on launchpad or something with the necessary changes and report back Good luck getting ori into Debian, Thanks Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs

Bug#793659: RFS: ori/0.8.1+ds1-1 [ITP]

. Replication, History, and Grafting in the Ori File System. In Proceedings of the 24th Symposium on Operating Systems Principles, November 2013. http://dl.acm.org/ft_gateway.cfm?id=2522721ftid=1403940dwn=1 Please consider sponsoring my package. Many thanks and regards Afif -- Afif Elghraoui

Bug#793659: RFS: ori/0.8.1+ds1-1 [ITP]

the package with dget using this command: dget -x http://mentors.debian.net/debian/pool/main/o/ori/ori_0.8.1+ds1-1.dsc Many thanks and regards, Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject

Bug#787977: Debian packages for the SMRTAnalysis suite (and Python3 compatibility)

.html 4. https://wiki.debian.org/Python/StretchRoadmap 5. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=783833#10 6. http://anonscm.debian.org/cgit/debian-med/python-pbcore.git/tree/debian/patches/modernize-python.patch -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#753490: mips/mipsel in samtools and pysam (was: finalizing pysam 0.8.3)

python2/python3 transition issues, I think any new failures should stand out, so I will review these pysam patches. Thanks for all your support Regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org

Bug#793353: debian-maintainers: Please add Afif Elghraoui as a Debian Maintainer

Package: debian-maintainers Severity: normal Tags: patch Please add my key to the Debian maintainers keyring. The jetring changeset is attached. Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name Comment: Add Afif Elghraoui a...@ghraoui.name as a Debian

Bug#792664: ITP: ori -- secure distributed file system

Package: wnpp Severity: wishlist Owner: Afif Elghraoui a...@ghraoui.name X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: ori Version : 0.8.1 Upstream Author : Stanford University orifs-de...@lists.stanford.edu * URL : http://ori.scs.stanford.edu/ * License

Bug#792664: ITP: ori -- secure distributed file system

to have orifs on my android phone. It looks like this is a direction the developers intend to go [2]. 1. https://mailman.stanford.edu/pipermail/orifs-devel/2015-June/000171.html 2. https://mailman.stanford.edu/pipermail/orifs-devel/2015-April/000163.html Regards Afif -- Afif Elghraoui

Bug#792058: [Debian-med-packaging] Bug#792058: python3-cobra: SyntaxError: invalid syntax (2.x-isms)

are intended to provide jython support according to upstream, and jython is not available for python3. These files aren't relevant for this package, so I will make sure that they are removed from python3-cobra. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#757610: Fix for stable

and regards Afif 1. https://github.com/zotero/zotero-standalone-build/issues/35#issuecomment-83163124 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name Description: Fix issue of empty preferences window Origin: upstream, https://github.com/zotero/zotero-standalone-build/commit

Bug#787981: Request for Sponsorship - python-pbcore

Hello, I have updated this package for python3 and it is lintian clean. Would someone be able to upload to experimental? Its dependency python-pysam currently resides there. Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email

Bug#787981: Status of python-pbcore

possible. -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#787982: pbh5tools status

* This package build-depends on python-pbcore (#787981) * This package is python2-only and must be modified to support both python2 and python3. -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject

Bug#788224: Request for Sponsorship - python-cobra

Hi, team, I have finished preparing the first version of python-cobra. Could someone please review and upload it? Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject

Bug#788224: ITP: python-cobra -- constraint-based modeling of biological networks

. This packaging will be maintained by the Debian Med team at Vcs-Git: git://anonscm.debian.org/debian-med/python-cobra.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-cobra.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ

Bug#787981: upload for python-pbcore

Hello, I believe my python-pbcore package is ready for uploading. It depends on a newer version of python-pysam than is currently in unstable, but it's not a build-dependency. If that's ok, I'd like to request a review and upload of python-pbcore. Thanks and regards Afif -- Afif Elghraoui

Bug#787982: ITP: python-pbh5tools -- tools for manipulating HDF5 files produced by, Pacific Biosciences sequencing instruments

://anonscm.debian.org/debian-med/python-pbh5tools.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbh5tools.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Bug#787981: ITP: python-pbcore -- Python library for processing Pacific Biosciences data, files

will be by the Debian Med team at Vcs-Git: git://anonscm.debian.org/debian-med/python-pbcore.git Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/python-pbcore.git -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org

Bug#787977: ITP: smrtanalysis -- software suite for single molecule, real-time sequencing

sequences. This is intended as a metapackage to depend on all the components of SMRTAnalysis, which are managed in separate SCM repositories at https://github.com/PacificBiosciences. It will be maintained by the Debian Med team at http://anonscm.debian.org/cgit/debian-med/smrtanalysis.git -- Afif

Bug#784863: Debian package for kmer

+2004-1.html 2. http://anonscm.debian.org/cgit/debian-med/kmer-tools.git/tree/debian -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#784863: [MoM] kmer-tools status update

Hi, Andreas, On الإثنين 25 أيار 2015 00:13, Andreas Tille wrote: Hi Afif, On Sun, May 24, 2015 at 11:12:00PM -0700, Afif Elghraoui wrote: Hi, Andreas, I tried to go ahead with packaging shared libraries, but it looks like I have to read three to five more manuals before I can proceed and know

Bug#784863: [MoM] kmer-tools status update

get this warning for them. Otherwise, the package is lintian clean. How does this look to you? Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Bug#784863: Debian package for kmer

-sharedlibs.html -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#784863: Debian package for kmer -- test suites

the Debian Med list and the packaging log for kmer in Debian. -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#395843: Status Report (wgs-assembler)

://bugs.debian.org/784863 for its status. -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#784863: a note for watchers of this log

-- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#784863: ITP: kmer-tools -- suite of tools for DNA sequence analysis

Package: wnpp Severity: wishlist Owner: Debian Med Team debian-...@lists.debian.org * Package name: kmer-tools Version : 20141114+1994 Upstream Author : Brian Walenz brianwal...@users.sourceforge.net * URL : http://kmer.sourceforge.net * License : GPL

Bug#709925: FreedomSponsors Entry

I made a proposal for this issue on FreedomSponsors [1] in case anyone is interested in putting a bounty on it. I'd like to package this, but I doubt it will be anytime soon. Maybe this will become more interesting for someone else to take on and it will get done faster. Regards, Afif 1.

Bug#776640: dmtcp: Please include plugins from the source package

Hello, On الأربعاء 4 شباط 2015 13:16, Gene Cooperman wrote: Hi Afif, Sorry for the delay in writing back. We talked about your request. No problem. Thanks for considering We're hesitant to package the plugins in the _ contrib/ _ directory, because those are contributed by various

Bug#776640: dmtcp: Please include plugins from the source package

Package: dmtcp Version: 2.3.1-6 Severity: normal Dear Maintainer, Many thanks for your package. I (privately backported and) installed this version from testing to use dmtcp with the plugins and didn't find them. It looks like the plugins in the source archive's contrib/ directory are not

Bug#775318: debian-policy: Using /srv instead of /var/lib for served user-level data

On الثلاثاء 13 كانون الثاني 2015 22:34, Russ Allbery wrote: Yes, you're entirely right -- this is weird and kind of contradictory and it's hard to figure out just what this was supposed to mean. What I spelled out is what we arrived at in previous discussion, but there may be other possible

Bug#775318: debian-policy: Using /srv instead of /var/lib for served user-level data

Package: debian-policy Severity: wishlist Dear Maintainer, I wanted to separate user-level data (for special RAID, backups, encryption and such) from system data on my machine, so I targeted /home and /srv. I found out that data managed by system services are being stored in

Bug#775318: debian-policy: Using /srv instead of /var/lib for served user-level data

Hello, On الثلاثاء 13 كانون الثاني 2015 19:50, Russ Allbery wrote: I'm afraid that you're misreading the FHS. It actually*prohibits* the distribution from doing what you want and using /srv by default. This is the important part of the /srv description for this purpose: The methodology

Bug#775318: debian-policy: Using /srv instead of /var/lib for served user-level data

Forgot to reply-all and include the bug address... رسالة ممرّرة الموضوع: Re: Bug#775318: debian-policy: Using /srv instead of /var/lib for served user-level data التاريخ:Tue, 13 Jan 2015 22:21:30 -0800 مِن:Afif Elghraoui afif.elghra...@openmailbox.org إلى

Bug#708508: pdfinfo and pdftotext

It appears that the only modification upsteam made to pdfinfo is to redirect its output to a file. As suggested in the mentioned thread [1], a shell script wrapper might be used to call poppler's pdfinfo and do this output redirection as zotero requires. I appreciate your work on this

Bug#653079: xorg: Xorg fails to initialize in testing branch on Radeon

. It is a severe problem since the machine is no longer practically usable without the graphical interface and I have not been able to find a workaround on Jessie. -- Afif Elghraoui System Administrator, Biological Medical Informatics Research Center San Diego State University

Bug#762999: xorg: X fails to initialize - no screens found

Package: xorg Version: 1:7.7+7 Severity: serious Dear Maintainer, * What led up to the situation? After executing dist-upgrade to move from Wheezy to Jessie, I am faced with the text login prompt rather than kdm. * What exactly did you do (or not do) that was effective (or

Bug#653079: xorg: Xorg fails to initialize in testing branch on Radeon

Package: xorg Version: 1:7.7+7 Followup-For: Bug #653079 Dear Maintainer, * What led up to the situation? I was running Wheezy; upon dist-upgrade to testing, I am faced with the console login prompt rather than kdm. * What exactly did you do (or not do) that was effective (or

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