Bug#1064810: transition: mpi-defaults

2024-05-05 Thread Alastair McKinstry
On 05/05/2024 16:59, Sebastiaan Couwenberg wrote: On 2/26/24 7:40 AM, Alastair McKinstry wrote: OpenMPI 5.0 drops 32-bit support, so we need to move those archs to MPICH. This transition is blocking many of the remaining packages rebuilt for 64-bit time_t. The autopkgtest for slurm-wlm

Bug#1069745: magics-python: wrong arch: any packaging builds potentially uninstallable packages

2024-04-25 Thread Alastair McKinstry
changes this evening. Kind regards and thanks for maintaining this package in Debian Science team Andreas. -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 e: mckins...@debian.org, im: @alastair:mckinstry.ie

Bug#1064810: Bug#1067055: openmpi: error: implicit declaration of function 'OPAL_THREAD_ADD_FETCH64'

2024-04-03 Thread Alastair McKinstry
4.1.2 that it can be configured to use. I can prepare this for openmpi on the debian/trixie branch; to upload with a fix for #1067055, regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e:alast...@mckinstry.ie, im

Bug#1064810: Bug#1067055: openmpi: error: implicit declaration of function 'OPAL_THREAD_ADD_FETCH64'

2024-04-03 Thread Alastair McKinstry
Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1068322: scalapack: Please change the Build-dep on libopenmpi-dev to 64-bit systems only

2024-04-03 Thread Alastair McKinstry
on libopenmpi-dev to 64-bit only (ie $(OPENMPI_AVAILABLE_ARCHITECTURES) ). Thanks Alastair McKinstry -- System Information: Debian Release: 12.5 APT prefers stable-security APT policy: (500, 'stable-security'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-18-amd64 (SMP w/4

Bug#1068321: vtk9: Please change B-D on libhdf5-openmpi-dev to libhdf5-mpi-dev

2024-04-03 Thread Alastair McKinstry
on 32-bit systems. Please build-dep on libhdf5-mpi-dev instead. Thanks Alastair McKinstry -- System Information: Debian Release: 12.5 APT prefers stable-security APT policy: (500, 'stable-security'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-18-amd64 (SMP w/4 CPU

Bug#1068320: hdf5: Needs to not depend on libopenmpi-dev for 32-bit systems

2024-04-03 Thread Alastair McKinstry
is available for all archs. Please fix this for the mpi-defaults transition. Thanks Alastair McKinstry -- System Information: Debian Release: 12.5 APT prefers stable-security APT policy: (500, 'stable-security'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-18-amd64 (SMP

Bug#1068319: armci-mpi: debian-...@lists.debian.org

2024-04-03 Thread Alastair McKinstry
systems. Please prepare armci-mpi for this transition. Regards Alastair McKinstry -- System Information: Debian Release: 12.5 APT prefers stable-security APT policy: (500, 'stable-security'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-18-amd64 (SMP w/4 CPU threads

Bug#1068318: code-saturne: Build against mpich for MPI on 32-bit systems

2024-04-03 Thread Alastair McKinstry
OpenMPI is not present. Thanks Alastair McKinstry -- System Information: Debian Release: 12.5 APT prefers stable-security APT policy: (500, 'stable-security'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-18-amd64 (SMP w/4 CPU threads; PREEMPT) Locale: LANG=en_IE.UTF-8

Bug#1064810: Bug#1067055: openmpi: error: implicit declaration of function 'OPAL_THREAD_ADD_FETCH64'

2024-04-02 Thread Alastair McKinstry
would do that - setting up eg ratt to rebuild all on 32-bit archs (as everything on 64-bit will not have changed.) I'm sorry I missed the dropped 32-bit support for pmix; I tested on 64-bit platforms only. Regards Alastair -- Alastair McKinstry, GPG

Bug#1067055: openmpi: error: implicit declaration of function 'OPAL_THREAD_ADD_FETCH64'

2024-04-01 Thread Alastair McKinstry
want the transitions to be done simultaneously, it might be the best answer. What does the release team think? bye, //mirabilos -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e:alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1064902: ratt fails to add deb:// line if appropriate line not in apt/sources.list

2024-02-27 Thread Alastair McKinstry
Package: ratt Version: 0.0~git20190123.9e77a6d-1+b6 Severity: normal I ran ratt on a system without a deb: line in /etc/apt/sources.list for the dist. It calls dose-ceve without the necessary deb:// and silently fails to find the right rdeps to rebuild. Please add some --verbose debugging and

Bug#1064810: transition: mpi-defaults

2024-02-26 Thread Alastair McKinstry
On 26/02/2024 12:03, Drew Parsons wrote: On 2024-02-26 07:40, Alastair McKinstry wrote: Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: mpi-defau...@packages.debian.org, debian-scie...@lists.debian.org Control

Bug#1064810: transition: mpi-defaults

2024-02-25 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: mpi-defau...@packages.debian.org, debian-scie...@lists.debian.org Control: affects -1 + src:mpi-defaults OpenMPI 5.0 drops 32-bit support, so we need to move those archs to

Bug#962786: Are you still working on pcpp?

2024-02-14 Thread Alastair McKinstry
Hi Just checking again. Do you mind if I upload python3-pcpp? Thanks Alastair On 01/02/2024 14:55, Alastair McKinstry wrote: Hi, I need pcpp for my own package "loki-ecmwf". I have it ready to upload if you have no interest anymore. Best regards Alastair -- Alastair McKi

Bug#1063532: ITP: ford -- Fortran Documentation tool

2024-02-09 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: ford Version : 7.0.5 Upstream Contact: Christopher MacMackin * URL : https://github.com/Fortran-FOSS-Programmers

Bug#1063521: ITP: pymbolic -- Easy Expression Trees and Term Rewriting library

2024-02-09 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-pyt...@lists.debian.org * Package name: pymbolic Version : 2022.2 Upstream Contact: Andreas Klöckner * URL : https://github.com/inducer/pymbolic * License

Bug#1063520: ITP: codetiming -- A Timer package for Python code

2024-02-09 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: codetiming Version : 1.4.0 Upstream Contact: David Beazley * URL : https://pypi.python.org/pypi/codetiming * License : MIT Programming Lang

Bug#962786: Are you still working on pcpp?

2024-02-01 Thread Alastair McKinstry
Hi, I need pcpp for my own package "loki-ecmwf". I have it ready to upload if you have no interest anymore. Best regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1061367: ITP: loki-ecmwf -- Source-to-source code translator for Fortran

2024-01-22 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: loki-ecmwf Version : 0.1.6 Upstream Contact: Michael Lange (michael.la...@ecmwf.int) * URL : https://github.com/ecmwf-ifs/loki * License

Bug#1061366: python3.12: Python3.12 segfaults on python-xarray testsuite

2024-01-22 Thread Alastair McKinstry
Package: python3.12 Version: 3.12.1-2 Severity: serious Justification: 4 X-Debbugs-Cc: debian-pyt...@lists.debian.org Python3.12 segfaults on the unittest suite for python-xarray (2024.01.0, head of tree in debian/latest) Unfortunately I cannot get a core dump yet to be more specific; this is on

Bug#1061246: newt FTCBFS: uses the wrong python-config

2024-01-22 Thread Alastair McKinstry
? Do you have other ideas for solving this? Helmut -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1055848: Reproducing

2024-01-19 Thread Alastair McKinstry
I've now been able to setup autopkgtest locally based on sbuild. I get failures in an autopkgtest (sbuild sid) chroot, but not when I do a clean pbuilder chroot via sid to do "pbuilder login". Investigating the differences between what should be identical chroots. Alastair -

Bug#1060077: transition: g2clib

2024-01-05 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: g2c...@packages.debian.org, sramac...@debian.org Control: affects -1 + src:g2clib There is a minor transition I wish to proceed. g2clib upstream have added an SOVERSION

Bug#1058876: libopenmpi-dev: paths missing /usr/include...(for fortran mpi.mod)

2023-12-30 Thread Alastair McKinstry
FMODDIR from /usr/lib/ to /usr/include to match what appears to be most conventional, but given the problems caused, I'm backing out that change and reverting to /usr/lib/${DEB_HOST_MULTIARCH}/. It will take changes in dh-fortran-mod and openmpi which I'm doing today. Alastair -- Alastair

Bug#1058876: libopenmpi-dev: paths missing /usr/include...(for fortran mpi.mod)

2023-12-27 Thread Alastair McKinstry
} and evaluating the wrapper-data files at runtime. My hacking on these files in d/rules is causing the errors. I'll work on a better solution. Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1058876: libopenmpi-dev: paths missing /usr/include...(for fortran mpi.mod)

2023-12-26 Thread Alastair McKinstry
. Debugging slowly. -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1058923: transition: g2clib

2023-12-18 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: g2c...@packages.debian.org, debian-rele...@lists.debian.org Control: affects -1 + src:g2clib There is a minor transition I wish to proceed. g2clib upstream have added an

Bug#1057727: Breaking multi-arch: foreign

2023-12-16 Thread Alastair McKinstry
. pkg-config can sort out the stacking as needed. Thanks Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@mckinstry.ie, im: @alastair:mckinstry.ie

Bug#1055848: Processed: Re: cfgrib failing to find eccodes

2023-12-12 Thread Alastair McKinstry
'. -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 e: mckins...@debian.org, im: @alastair:mckinstry.ie

Bug#1057476: flang-17: flang-new-17 fails to compile code that gfortran accepts

2023-12-05 Thread Alastair McKinstry
Package: flang-17 Version: 17.0.6-1 Severity: normal Tags: upstream Taking code "mo_cdi.f90" from the package "cdo", flang-new-17 -c mo_cdi.f90 gives: """ error: loc("/home/alastair/git/dh-fortran-mod/tests/flang-17/../mo_cdi.f90":19:16): redefinition of symbol named 'free' error: Lowering to

Bug#1057266: ITP: lfortran -- Fortran compiler

2023-12-02 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: lfortran Version : 0.29.0 Upstream Contact: @lfortranorg * URL : https://www.lfortran.org/ * License

Bug#1056054: Reported upstream

2023-11-17 Thread Alastair McKinstry
I've opened a bug upstream in prrte. https://github.com/openpmix/prrte/issues/1849 -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 e: mckins...@debian.org, im: @alastair:mckinstry.ie

Bug#1050854: Please push your changes to python-xarray

2023-11-13 Thread Alastair McKinstry
. Please be so kind to push your changes to Salsa. Thanks a lot for your work on this package Andreas. [1] https://salsa.debian.org/science-team/python-xarray -- http://fam-tille.de -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 e: mckins...@debian.org, im

Bug#1052191: unicode-data: Please update for the new 15.1 release

2023-10-23 Thread Alastair McKinstry
team. https://wiki.debian.org/Teams/ReleaseTeam/Transitions -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 e: mckins...@debian.org, im: @alastair:mckinstry.ie

Bug#1051017: cdo: Major data error with ICON files

2023-09-01 Thread Alastair McKinstry
Package: cdo Version: 2.2.1 Severity: serious Tags: upstream Justification: 2 X-Debbugs-Cc: Momtchil Momtchev Just a heads up that there is a serious issue with the cdo version in bookworm - it produces broken (flipped on the Y-axis) GRIBs when "remapping" (extracting) data from the ICON

Bug#1039871: proposed patch fails

2023-08-03 Thread Alastair McKinstry
Hi Unfortunately the proposed patch doesn't fix the problem. With later versions of xarray now using pooch to download data, and failing if its not setup, a better fix to the download issue is needed. regards Alastair -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph

Bug#1041202: flang-16: flang fails to compile: missing libraries

2023-07-15 Thread Alastair McKinstry
Package: flang-16 Version: 16.0.6-4 Severity: normal flang-new fails to compile a hello world program: alastair@debian:/tmp$ flang-new-16 -o foo hello.f90 /usr/bin/ld: cannot find -lFortran_main: No such file or directory /usr/bin/ld: cannot find -lFortranRuntime: No such file or directory

Bug#1022255: fixed in python-xarray 2022.11.0-2

2022-12-12 Thread Alastair McKinstry
:12:02 + Debian FTP Masters wrote: Source: python-xarray Source-Version: 2022.11.0-2 Done: Alastair McKinstry We believe that the bug you reported is fixed in the latest version of python-xarray, which is due to be installed in the Debian FTP archive. A summary of the changes between

Bug#1025890: RM: flang -- ROM; replaced by flang from llvm-toolchain

2022-12-11 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Please remove flang from unstable (libflang-dev in particular) as flang is to be build directly from llvm-toolchain

Bug#1024859: change in the extention importation with 3.11

2022-12-06 Thread Alastair McKinstry
apping too (#1024555) -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1024555: Fwd: swig4.0 bug causes FTBFS of XDMF

2022-12-06 Thread Alastair McKinstry
. This is currently a blocker for the python3.11 transition. Best regards Alastair McKinstry -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1024911: change in the extention importation with 3.11

2022-12-06 Thread Alastair McKinstry
ted without a traverse function but with the HAVE_GC flag set. It doesn't at first glance look like the code for boost1.80 is different. A Python/boost expert is now needed. Regards Alastair McKinstry mckins...@debian.org -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit

2022-11-21 Thread Alastair McKinstry
On 21/11/2022 11:28, Drew Parsons wrote: On 2022-11-21 10:10, Alastair McKinstry wrote: Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name    : fiat   Version : 1.0.0   Upstream

Bug#1024552: ITP: ectrans -- Spherical Harmonics Transforms library

2022-11-21 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: ectrans Version : 1.1.0 Upstream Author : ECMWF * URL : https://github.com/ecmwf-ifs/trans * License

Bug#1024551: ITP: fiat -- Fortran IFS and Arpege Toolkit

2022-11-21 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: fiat Version : 1.0.0 Upstream Author : ECMWF * URL : https://github.com/ecmwf-ifs/fiat * License : Apache

Bug#1021603: libpmix2

2022-10-19 Thread Alastair McKinstry
, Oct 16, 2022 at 5:20 PM Ron Lovell wrote: Same issue as Arch issue 279267? -- James Ronald Lovell Huntsville, AL, USA -- James Ronald Lovell Huntsville, AL, USA -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e:alast...@sceal.ie, im

Bug#1021603: libpmix2: mca_base_component_repository_open: unable to open mca_pmix_ext3x: libpmix.so.2: cannot open shared object file: No such file or directory (ignored)

2022-10-12 Thread Alastair McKinstry
while the tests are running. This works fine with the version in testing. Andreas -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1020640: libglew2.2: Glew built without, wxwidgets with EGL support

2022-10-03 Thread Alastair McKinstry
I actually exercised any GL code with limesuite (it seems to need some hardware I don't have to be useful). Cheers, Olly -- Alastair McKinstry, GPG: 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 ph: +353 87 6847928 e: alast...@sceal.ie, im: @sceal.ie:mckinstry

Bug#1017727: autoconf-archive: ax_cc_maxopt.m4 change breaks code due to syntax error

2022-08-19 Thread Alastair McKinstry
Package: autoconf-archive Version: 20220211-1 Severity: serious Tags: patch Justification: Policy 4.6 m4/ax_cc_maxopt.m4 has a syntax error that causes silo-llnl to FTBFS. See #1017240. The following patch fixes it: --- ax_cc_maxopt.m4.orig2022-08-19 16:13:36.230050352 +0100 +++

Bug#1011751: ecmwflibs: versions() uses hard-coded values

2022-05-26 Thread Alastair McKinstry
Package: ecmwflibs Version: 0.4.16 Severity: normal This package has several problems: credits() uses a file that is not shipped with the package versions() uses hard-coded values (at compile-time) not the Debian releases -- System Information: Debian Release: 11.3 APT prefers

Bug#1010601: transition: g2clib

2022-05-05 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: debian-scie...@lists.debian.org After much ambiguity upstream have changed the name of a library from libgrib2c to libg2c in version 1.6.4 (!) So, the dev file is

Bug#980107: python-rioxarray

2022-04-25 Thread Alastair McKinstry
://salsa.debian.org/antonio.valentino/python-rioxarray [2] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=995299 kind regards Antonio Il 27/09/21 11:59, Alastair McKinstry ha scritto: Hi Magnus I downloaded and reviewed the package. As it currently stands it needs some work to deal

Bug#1004556: libmpich-dev: The simplest MPI program compiled with mpich crashes

2022-02-22 Thread Alastair McKinstry
I can disable pmix support in mpich. Pmix is working fine in openmpi, so it’s an mpich/pmix issue of some sort (or maybe ch4) Regards Alastair On 22/02/2022, 14:57, "debian-science-maintainers on behalf of Drew Parsons" wrote: Package: mpich Followup-For: Bug #1004556 My guess

Bug#1001464: paraview: enable web support

2021-12-10 Thread Alastair McKinstry
Hi Christophe Yes, I'll test this on the next release (post GDAL transition) Regards Alastair On 10/12/2021, 13:18, "debian-science-maintainers on behalf of Christophe Trophime" wrote: Package: paraview Version: 5.10.0~rc1-1 Severity: wishlist Dear Maintainer, Could

Bug#1000691: RM: cylc -- ROM; replaced by cylc-flow

2021-11-27 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal This package (cylc) is being split upstream into two source packages - cylc-flow and cylc-ui. The original cylc is now replaced by cylc-flow, now present in unstable/testing. Please remove the cylc source package and binaries

Bug#998682: libgetdata: b-d on python3-all-dev, but not built for all supported Python3 versions

2021-11-07 Thread Alastair McKinstry
Hi Investigating locally this fails because numpy does not yet support python3.10. Some form of tracking is needed as I think multiple packages are in this situation, and the ben tracker in transitions.debian.org is incomplete. Regards Alastair On 06/11/2021, 08:36,

Bug#997796: unicode-data: Missing emoji-data.txt since 14.0.0-1

2021-11-02 Thread Alastair McKinstry
Hi Nilesh A build is in the NEW queue to fix this, Regards Alastair From: Nilesh Patra Reply to: Nilesh Patra , <997...@bugs.debian.org> Date: Tuesday 2 November 2021 at 09:48 To: Alastair McKinstry Cc: <997...@bugs.debian.org> Subject: Bug#997796: unicode-data: M

Bug#997997: transition: netcdf-parallel

2021-10-28 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: debian-scie...@lists.debian.org Hi dear release team, I request permission to undetake the netcdf-parallel transition. netcdf-parallell is the parallel build(s) of

Bug#996642: FTBFS with glibc 2.32

2021-10-26 Thread Alastair McKinstry
Hi Nilesh Just uploaded a patched csh now. Apologies I was trying to port a later snapshot of csh but ran into porting issues. Regards Alastair From: Nilesh Patra Date: Monday 25 October 2021 at 11:17 To: <996...@bugs.debian.org> Cc: Alastair McKinstry Subject: Re: csh:

Bug#993624: RM: eckit [armel i386 armhf mipsel] -- ROM; 32-bit archs no longer supported

2021-10-14 Thread Alastair McKinstry
On 13/10/2021 16:25, Sebastiaan Couwenberg wrote: On 10/13/21 5:15 PM, Alastair McKinstry wrote: I've updated fdb, odc, metkit and fckit to also remove 32-bit packages That doesn't not get the old binary packages removed from the archive, RM bugreports for those will be required too. Kind

Bug#996458: RM: fdb [i386 armel armhf mipsel] -- ROM; Dependency eckit no longer supports 32-bit archs

2021-10-14 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Dependency eckit no longer supports 32-bit archs

Bug#996457: RM: metkit [armel armhf mipsel i386] -- ROM; Dependency eckit no longer supports 32-bit archs

2021-10-14 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Dependency eckit no longer supports 32-bit archs

Bug#996456: RM: odc [i386 mipsel armhf armel] -- ROM; Dependency eckit no longer supports 32-bit archs

2021-10-14 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Dependency eckit no longer supports 32-bit archs

Bug#996454: RM: fckit [armel armhrf i386 mipsel] -- ROM; Dependency eckit no longer supports 32-bit archs

2021-10-14 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal fckit is a Fortran wrapper for a package eckit that no longer supports 32-bit archs. The latest build no longer tries to build on 32-bit archs, but existing binaries remain.

Bug#993624: RM: eckit [armel i386 armhf mipsel] -- ROM; 32-bit archs no longer supported

2021-10-13 Thread Alastair McKinstry
I've updated fdb, odc, metkit and fckit to also remove 32-bit packages (metview was already 64-bit only) Alastair On 10/10/2021 09:08, Sebastiaan Couwenberg wrote: On Fri, 03 Sep 2021 20:50:51 +0100 Alastair McKinstry wrote: Please remove the 32-bit archs - they are no longer supported

Bug#995662: info-beamer: Please change build-depends to libglew-dev

2021-10-04 Thread Alastair McKinstry
Package: info-beamer Followup-For: Bug #995662 As part of the glew transition, libglew1.5-dev is going away, while building against libglew-dev works. Please update the build-depends accordingly. Thanks Alastair -- System Information: Debian Release: 11.0 APT prefers stable-security APT

Bug#995700: phlipple: Please update the build-depends to libglew-dev

2021-10-04 Thread Alastair McKinstry
Package: phlipple Severity: normal As part of the glew transition, libglew1.5-dev is going away, while building against libglew-dev works. Please update the build-depends accordingly. Thanks Alastair -- System Information: Debian Release: 11.0 APT prefers stable-security APT policy:

Bug#995698: rlvm: Please update the build-depends to libglew-dev

2021-10-04 Thread Alastair McKinstry
Package: rlvm Severity: normal As part of the glew transition, libglew1.5-dev is going away, while building against libglew-dev works. Please update the build-depends accordingly. Thanks Alastair -- System Information: Debian Release: 11.0 APT prefers stable-security APT policy: (500,

Bug#995699: pymol: Please update the build-depends to libglew-dev

2021-10-04 Thread Alastair McKinstry
Package: pymol Severity: normal As part of the glew transition, libglew1.5-dev is going away, while building against libglew-dev works. Please update the build-depends accordingly. Thanks Alastair -- System Information: Debian Release: 11.0 APT prefers stable-security APT policy: (500,

Bug#995441: ITP: pyodc -- A Python interface to `odc` for encoding/decoding ODB-2 files

2021-10-01 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: pyodc Version : 1.1.0 Upstream Author : European Centre for Medium-range Forecasts (ECMWF) * URL : https://github.com/ecmwf/pyodc * License

Bug#995293: ITP: cylc-flow -- rename of upstream source - splitting package

2021-09-29 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: cylc-flow Version : 8.0 Upstream Author : NIWA * URL : http://cylc.github.io/cylc * License : GPL-3 Programming Lang: Python Description

Bug#994086: transition: netcdf

2021-09-29 Thread Alastair McKinstry
0-1)OK Please go ahead Cheers Kind Regards, Bas -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-6847928 Green Party Councillor, Galway County Council

Bug#995055: transition: glew

2021-09-25 Thread Alastair McKinstry
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition X-Debbugs-Cc: debian-de...@lists.debian.org This transition is triggered by an SONAME change upstream. It does not appear to have any API transition though, and seems to cause no

Bug#994937: openscad: FTBFS ( due to cgal changes ?)

2021-09-23 Thread Alastair McKinstry
Package: openscad Version: 2021.01-1) Severity: serious Tags: ftbfs openscad now FTBFS: g++ -c -pipe -DSTACKSIZE=8388608 -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/openscad-2021.01=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y

Bug#994835: vice: Fails to build -- missing JPEG support

2021-09-21 Thread Alastair McKinstry
Package: vice Version: 3.5.0.dfsg-3 Severity: serious Tags: ftbfs Justification: ftbfs checking for png.h... yes checking for png_sig_cmp in -lpng... yes checking for jpeglib.h... no configure: error: JPEG support is missing make[1]: *** [debian/rules:18: override_dh_auto_configure] Error 1

Bug#994824: slop: FTBFS on sid

2021-09-21 Thread Alastair McKinstry
ng directory '/build/slop-7.5/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:114: CMakeFiles/slopy.dir/all] Error 2 make[2]: Leaving directory '/build/slop-7.5/obj-x86_64-linux-gnu' Best regards Alastair McKinstry -- System Information: Debian Release: 11.0 APT prefers master APT p

Bug#994756: ITP: findlibs -- Trivial python package to find C libraries

2021-09-20 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: findlibs Version : 0.0.2 Upstream Author : ECMWF (The European Centre for Medium-Range Weather Forecasts) * URL : https://github.com/ecmwf/findlibs

Bug#994480: ball: FTBFS following glibc change

2021-09-16 Thread Alastair McKinstry
Package: ball Version: 1.5.0+git20180813.37fc53c-6) Severity: serious Tags: ftbfs Justification: 4 FTBFS The package FTBFS : /srv/build/glew/rebuild/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h:12:10: fatal error: rpc/types.h: No such file or directory 12 |

Bug#993992: i386 regression

2021-09-13 Thread Alastair McKinstry
The bugs on mips, mips64el were unrelated – a problem with the proj8.patch (headers now conflicting due to proj.h in proj8 conflicting with hdf-eos5). This was resolved in 6.6.2-9. Remaining is a definite regression with gcc, or more correctly gfortran ; testing with gfortran 10.2.1-6 from

Bug#993631: cfgrib FTBFS: test failures

2021-09-03 Thread Alastair McKinstry
This is a bug in python3-eccodes which now depends on ecmwflibs. Ecmwflibs in now in the NEW queue On 03/09/2021, 21:51, "Adrian Bunk" wrote: Source: cfgrib Version: 0.9.9.0-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/logs.php?pkg=cfgrib=0.9.9.0-1

Bug#993624: RM: eckit [armel i386 armhf mipsel] -- ROM; 32-bit archs no longer supported

2021-09-03 Thread Alastair McKinstry
Package: ftp.debian.org Severity: normal Please remove the 32-bit archs - they are no longer supported upstream

Bug#993581: ITP: ecmwflibs -- A Python package that wraps some of ECMWF libraries to be used by Python interfaces to ECMWF software.

2021-09-03 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: ecmwflibs Version : 0.13.3 Upstream Author : European Centre for Medium-Range Forecasts * URL : https://github.com/ecmwf/ecmwflibs * License

Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.

2021-08-26 Thread Alastair McKinstry
8.21 11:36, Alastair McKinstry wrote: How does this interact with xarray, etc? I don't know; the reason to package it is that it is a new requirement of the "yt" package. It was first developed within yt, and then separated. There is another attempt to use units in the "astropy&qu

Bug#992999: ITP: unyt -- Python package for handling numpy arrays with units.

2021-08-26 Thread Alastair McKinstry
about units. It is a new build dependency of the "yt" package. I will maintain it within the Debian Python team. Salsa dir is https://salsa.debian.org/python-team/packages/unyt Best regards Ole -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-684

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-27 Thread Alastair McKinstry
Ok, openmpi, redone ucx (to avoid 1.10.1~rc1 ) uploaded and unblock sent. Alastair On 16/05/2021, 06:39, "Lucas Nussbaum" wrote: Hi Alaitair, Thanks a lot for fixing this. Unfortunately, I noticed that the upload to unstable was built against ucx 1.10.1~rc1-1, so both need

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-26 Thread Alastair McKinstry
Alastair On 20/05/2021 16:33, Paul Gevers wrote: Hi Alastair, On Sun, 16 May 2021 07:25:51 +0100 Alastair McKinstry wrote: No, I wanted to wait and check if there were any issues before issuing an unblock request. ucx is not bullseye material, it doesn't comply at all with the release policy

Bug#989111: libopenmpi-dev: broken symlinks: /usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_{ofi,ompio}.so

2021-05-26 Thread Alastair McKinstry
386) /usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_ompio.so -> libmca_common_ompio.so.41.29.1 (libopenmpi-dev:i386) The corresponding libraries do not seem to be shipped in libopenmpi3 any longer. cheers, Andreas -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sc

Bug#984956: Still occurring here with 4.1.0-9

2021-05-26 Thread Alastair McKinstry
Alastair McKinstry Hi Can you confirm that openmpi 4.1.0-9 is present on all the nodes ? Regards Alastair From: Dominique Brazziel Reply to: Dominique Brazziel , <984...@bugs.debian.org> Date: Thursday 20 May 2021 at 13:03 To: "984...@bugs.debian.org" <984...@bugs.debia

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-16 Thread Alastair McKinstry
-1, so both need to migrate to testing. Did you already engage discussions with the release team? I did not find an unblock request. Lucas -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#984956: Pmix issues with openmpi-4.1.0

2021-05-13 Thread Alastair McKinstry
building to avoid accidental collisions. We could put Build-Conflicts: libpmix-dev into openmpi but we need to test this. Regards Alastair -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#982601: python3-paraview Conflicts: python3-vtk9

2021-02-12 Thread Alastair McKinstry
python3-paraview has just been given Conflicts: python3-vtk9, which is a little confusing. Does it mean python3-paraview replaces python3-vtk9? Or should not python3-paraview not be used at all? (obviously there are other packages which use vtk via python). For this release,

Bug#981289: udunits breaks gnudatalanguage autopkgtest

2021-01-29 Thread Alastair McKinstry
Could you check that? Best regards Ole -- Alastair McKinstry, email: alast...@sceal.ie, matrix: @alastair:sceal.ie, phone: 087-6847928 Green Party Councillor, Galway County Council

Bug#980448: pmix transition

2021-01-20 Thread Alastair McKinstry
Hi Graham Can these bugs be closed ? pmix tests are failing because of an openmpi bug , but its no longer due to pmix. Ditto, ucx errors that caused the failure are fixed in openmpi-4.1.0-6. openmpi 4.1.0-6 fails on libfabric: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=979041 I'm

Bug#980463: ITP: scil -- Scientific Compression Library (SCIL)

2021-01-19 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: scil Version : 0.1 Upstream Author : Julian Kunkel * URL : https://github.com/JulianKunkel/scil * License : LGPL-3 Programming Lang: C Description : Scientific Compression

Bug#965255: dh-fortran-mod: please make the output reproducible

2021-01-16 Thread Alastair McKinstry
On 16/01/2021 10:03, Chris Lamb wrote: Just checking whether you got the above re-open? :) Sorry I missed that. Done. Thanks Regards, -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#979041: libopempi3: aborts python code due to libfabric fork() issues

2021-01-15 Thread Alastair McKinstry
Ugh. Thanks Drew. What are the contents of /etc/openmpi/openmpi-mca-params.conf on the node? Does a simple hello world (see Debian/tests/hello* ) work without errors in the environment ? Regards Alastair On 15/01/2021, 08:39, "Drew Parsons" wrote: Package: libopenmpi3 Version:

Bug#980113: ITP: fpzip -- Floating Point array compression library

2021-01-14 Thread Alastair McKinstry
Package: wnpp Severity: wishlist Owner: Alastair McKinstry * Package name: fpzip Version : 1.3.0 Upstream Author : LLNL * URL : https://computing.llnl.gov/projects/fpzip * License : BSD Programming Lang: C Description : Floating Point array

Bug#980107: ITP: python-rioxarray -- rasterio xarray extension

2021-01-14 Thread Alastair McKinstry
tain it but will need a sponsor. -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.

Bug#980091: ITP: geocube -- Tool to convert geopandas vector data into rasterized xarray data.

2021-01-14 Thread Alastair McKinstry
Hi Magnus I'm happy to sponsor you. I'm one of the python-xarray maintainers. Alastair mckins...@debian.org On 14/01/2021, 10:18, "Magnus Hagdorn" wrote: Package: wnpp Severity: wishlist Owner: Magnus Hagdorn * Package name: geocube Version : 0.0.15

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