Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvili <mailatgo...@gmail.com>
X-Debbugs-Cc: debian-pyt...@lists.debian.org
<debian-de...@lists.debian.org,debian-as...@lists.debian.org,debian-pyt...@lists.debian.org>
* Package name: python-bibtexparser
Version : 0.6.
On 08/29/2015 10:27 AM, Matthias Klose wrote:
> Package: src:cufflinks
> Version: 2.2.1-1
> Severity: serious
> Tags: sid stretch
>
> cufflinks ftbfs in unstable, log attached.
>
>
>
> ___
> Debian-med-packaging mailing list
>
Hi Balasankar,
Our packages have a name conflict - /usr/bin/rex.
Please see the initial bug report:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=788294
Would you mind renaming the rex from rexical package to something else?
rexical seem to be a good name for example.
Alternatively I can
On 06/05/2015 03:04 PM, Geert Stappers wrote:
On Fri, Jun 05, 2015 at 02:08:37PM +0200, Simon Richter wrote:
On 05.06.2015 11:25, Alex Mestiashvili wrote:
This might be confusing to old people. PLIP is a protocol for
transporting IP packets over the parallel port.
I agree that the name
On 05/08/2015 08:51 PM, Aaron M. Ucko wrote:
Source: subread
Version: 1.4.6-p2+dfsg-1
Severity: serious
Justification: fails to build from source
Builds of subread covering only its main architecture-dependent binary
package (as on the autobuilders, or with debuild -B) have been
failing,
Dear Maintainer,
Tophat 2.0.13 started to include a convience copy of samtools 0.1.18,
I believe
this is technically a violation of Debian policy. Though I'm not sure
how hard
it would be properly fix the issue.
Diane Trout
Hi Diane,
Please see this thread for more details:
retitle 688066 'ITP: rex -- A framework for deployment and configuration
management'
owner 688066 !
On 03/02/2015 12:38 PM, Graham Inggs wrote:
Source: gmap
Version: 2014-10-22-1
Severity: normal
Tags: patch
Hi maintainer
I found that gmap FTBFS for i386 in sbuild (on amd64) and the Ubuntu
buildds [1] with the following errors:
gmap-genome128_hr.o: In function `count_trailing_zeroes':
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili mailatgo...@gmail.com
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org
* Package name: subread
Version : 1.4.6-p1
Upstream Author : shi at wehi dot edu dot au
* URL :
Package: devscripts
Version: 2.14.10
Severity: normal
trying to get the new upstream version of bowtie2[0]:
uscan --force-download
-- Scanning for watchfiles in .
-- Found watchfile in ./debian
-- In debian/watch, processing watchfile line:
opts=filenamemangle=s/(.*)(-source)(\..*$)/$1$3/
In the new version 0.6.0 of pam-abl available in testing the default
rule for sshd is the following:
+user_rule=*/sshd:5/1h
Do you think it is good enough as the default ?
here is the config:
http://anonscm.debian.org/cgit/collab-maint/libpam-abl.git/tree/debian/patches/update_config.patch
Package: lxc
Version: 1:1.0.5-2
Severity: important
that's what I get when I try to start a container:
lxc-start -n sid
lxc-start: No such file or directory - failed to read
/sys/fs/cgroup/lxc/cpuset.cpus
lxc-start: Failed to initialize cpuset for '/lxc' in '/sys/fs/cgroup'.
lxc-start: Device or
It seems that the problem was caused by cgroup mount defined in fstab.
This configuration worked fine with 3.12 ( just rebooted and tested -
container started).
Currently I commented out cgroup in fstab and after reboot everything works
fine.
I also see cgmanager process and cgroup mounts.
On 08/25/2014 03:41 PM, Andreas Tille wrote:
Hi,
On Sun, Aug 24, 2014 at 02:56:54PM +1200, Olly Betts wrote:
...
http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git
The script has some options to control the sorts of changes it makes -
see the README and --help output for more
Patch provided by Manuel Holtgrewe solves the build issues with
seqan-1.4 and tophat.
https://lists.fu-berlin.de/pipermail/seqan-dev/2014-July/msg1.html
Alex
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Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
* Package name: pyscanfcs
Version : 0.2.2
Upstream Author : Paul Mueller paul.mueller{at}biotec.tu-dresden.de
* URL : http://paulmueller.github.io/PyScanFCS
* License :
I am experiencing the same trouble with my i3-4130T CPU and Intel HD 4400.
It works fine with 3.13, but doesn't work on 3.14 and 3.15-rc8 kernels.
The symptoms are the same, I see only a picture or short line of a video
while the rest is static.
adding Option AccelMethod sna didn't help me.
Also
, 2014 at 10:45 PM, maximilian attems m...@stro.at wrote:
On Tue, Jun 10, 2014 at 10:38:24PM +0200, Alex Mestiashvili wrote:
I am experiencing the same trouble with my i3-4130T CPU and Intel HD
4400.
It works fine with 3.13, but doesn't work on 3.14 and 3.15-rc8 kernels.
The symptoms
Package: lxc
Version: 1.0.3-1
Severity: normal
after lxc update I get the following when I run lxc-ls:
#lxc-ls
Traceback (most recent call last):
File /usr/bin/lxc-ls, line 31, in module
import lxc
File /usr/lib/python3/dist-packages/lxc/__init__.py, line 25, in module
import _lxc
On 05/05/2014 10:25 PM, Petter Reinholdtsen wrote:
[Petter Reinholdtsen]
I am not sure that the configuration should be enabled by default
because in this case it will affect every pam service which use
/etc/pam.d/common-auth, like su, sudo, login and so on.
[...]
Btw, why is libpam-abl
Hi Petter,
On 05/05/2014 10:44 AM, Petter Reinholdtsen wrote:
I am not sure that the configuration should be enabled by default
because in this case it will affect every pam service which use
/etc/pam.d/common-auth, like su, sudo, login and so on.
I expect packages I install to work out of the
Hi Bill,
On 10/02/2013 01:06 AM, Bill Wohler wrote:
Package: libpam-abl
Version: 0.4.3-1
Severity: normal
Today I tried to whitelist one of my hosts with the following results.
The second pam_abl listing hung and had to be interrupted with C-c.
$ sudo pam_abl
expected listing
$
On 03/18/2014 02:09 PM, Petter Reinholdtsen wrote:
Package: libpam-abl
Version: 0.4.3-1
Severity: wishlist
Could libpam-abl be changed to behave more like libpam-shield, and
provide a file in /usr/share/pam-configs/ with the PAM setup as well as
a call to pam-auth-update in the postinst to
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
* Package name: python-multipletau
Version : 0.1.4
Upstream Author : Paul Mueller paul.mueller at biotec.tu-dresden.de
* URL : https://github.com/paulmueller/multipletau
* License
Hi Steffen,
Thank you, I've actually started from this page, also bowtie2 is listed
on this page:
https://ftp-master.debian.org/removals.html
So, I assume that it will be processed at some point.
Best,
Alex
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On 04/11/2014 12:29 AM, Diane Trout wrote:
On Thursday, April 10, 2014 15:30:21 Alex Mestiashvili wrote:
Dear mentors,
I would greatly appreciate if somebody would help with the #733352, I've
spent a couple of hours trying to resolve the issue but my cpp skills
are rather poor.
Thank you
Forwarded to upstream:
https://github.com/Sereal/Sereal/issues/47
Alex
Package: nscd
Version: 2.18-4
Severity: normal
Tags: patch
--- init.d.orig/nscd
+++ init.d/nscd
@@ -55,7 +55,7 @@
fi
# Wait for children to finish too
- start-stop-daemon --stop --quiet --oknodo --retry=0/30/KILL/5 --exec
$DAEMON /dev/null
+
Package: ftp.debian.org
Severity: normal
Dear FTP Masters,
New upstream release of bowtie2 doesn't build on mentioned in the
subject architectures.
In order to force transition from unstable to testing could you please
consider removal of packages in testing with non amd64 architectures ?
Package: src:linux
Version: 3.13.5-1
Severity: important
Dear Maintainers,
after updating to linux-image-3.13-1 I am not able to reach disks attached to
LSI SAS1068E sas controller.
The issue is described here:
http://bugs.launchpad.net/ubuntu/+source/linux/+bug/1276705
Thank you,
Alex
to be superior to cciss for new controllers.
Thank you,
Alex
[0] https://www.kernel.org/doc/Documentation/scsi/hpsa.txt
On Sat, Mar 1, 2014 at 8:22 AM, Petter Reinholdtsen p...@hungry.com wrote:
[Alex Mestiashvili]
Squeeze running on a HP DL380G7 with P410i controller with raid10 and
rai50
the problem was in the wrong liblensfun0 library.
after updating the library the problem is gone.
Sorry for the delay, was sure that I've send the report after the
resolution.
Thank you,
Alex
as a workaround one can define another audio encoder, for example -E ffaac
instead of default faac:
HandBrakeCLI --preset High Profile -E ffaac -i 00033.MTS -o
converted/00033_h.mkv
found here:
https://github.com/andreasscherbaum/handbrake-encode/blob/master/handbrake-encode.pl
lines 324-328.
Package: handbrake-cli
Version: 0.9.9+dfsg-2~2.gbpa4c3e9
Severity: important
Dear Maintainer,
HandBrakeCLI fails to convert video files:
for example:
HandBrakeCLI --preset Normal -i dscf3025.mov -o tmp/test.mkv
[14:19:25] hb_init: starting libhb thread
HandBrake rev5474 (2013121899) -
Hi,
thanks for submitting the bug, but I think that this kind of problems
should be fixed by the upstream.
You can submit it here:
https://sourceforge.net/p/bowtie-bio/bugs/
Best regards,
Alex
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Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvili a...@biotec.tu-dresden.de
* Package name: pycorrfit
Version : 0.8.0-2beta
Upstream Author : Paul Mueller paul.mueller{at}biotec.tu-dresden.de
* URL : http://paulmueller.github.io/PyCorrFit/
* License
The debian/copyright in the package I just downloaded from mentors still
has GPL-2.0+, are you sure this was fixed?
Sorry, the package on mentors was still the old one. ( it wasn't
uploaded because of .upload file, and I somehow forgot to upload it
again after I deleted the .upload file)
On 11/13/2013 12:27 AM, Paul Wise wrote:
On Tue, Nov 12, 2013 at 10:40 PM, Alex Mestiashvili wrote:
I am looking for a sponsor for my package authprogs
Since I may want to use this in the future, I've taken a look at it.
A review:
debian/copyright is incorrect, authprogs is GPL-2.0 not GPL
there is demand for this package, see #616126.
Regards,
Alex Mestiashvili
On 09/17/2013 12:28 PM, YunQiang Su wrote:
Package: bowtie2
Version: 2.1.0-2
X-Debbugs-CC: wzss...@gmail.com
This package has one or more -L/usr/lib in its build system,
which will make it ftbfs if there is libraries under /usr/lib,
while is not the default architecture, mips* for example.
On
Package: lightdm
Version: 1.6.0-3
Severity: important
Tried lightdm with lightdm-gtk-greeter and lightdm-kde-greeter,
the probem is very similar:
on the system I have configured ldap with 500+ users
after typing in the field the username, gtk-greeter freezes and in the console
I can see
On Tue, Sep 10, 2013 at 10:21 AM, Yves-Alexis Perez cor...@debian.orgwrote:
On mar., 2013-09-10 at 09:47 +0200, Alex Mestiashvili wrote:
Tried lightdm with lightdm-gtk-greeter and lightdm-kde-greeter,
the probem is very similar:
on the system I have configured ldap with 500+ users
Package: hugin
Version: 2013.0.0~rc1+dfsg-1
Severity: important
hugin crashes when I try to load any image
these are the messages if I start it in a terminal:
/usr/share/hugin/data/plugins/woa.py
CAT:Control Points
NAM:Warped Overlap Analysis
Package: libdancer-plugin-auth-extensible-perl
Severity: wishlist
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libdancer-plugin-auth-extensible-perl
Version : 0.20
Upstream Author : David Precious
* URL :
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libsession-storage-secure-perl
Version : 0.6
Upstream Author : David Golden
* URL :
After another look it seems to me that the real problem is #695826.
The new boost 1.49.0-4 is on the way to sid, let's see if it will be
autofixed.
Regards,
Alex
On 03/03/2013 10:34 AM, Paul Wise wrote:
On Sat, Mar 2, 2013 at 5:47 AM, Alex Mestiashvili wrote:
I am looking for a sponsor for my package authprogs
I don't intend to sponsor this but here is a review:
Dear Paul, thanks a lot for the review and sorry for such a long delay
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libcrypt-urandom-perl
Version : 0.29
Upstream Author : David Dick dd...@cpan.org
* URL :
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libnumber-tolerant-perl
Version : 1.701
Upstream Author : Ricardo Signes
* URL :
information about authprogs can be obtained from
http://www.hackinglinuxexposed.com/articles/20030115.html
http://www.hackinglinuxexposed.com/articles/20030115.html
The software seem to be very simple but nevertheless there is demand for this
package, see #616126.
Regards,
Alex
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili a...@biotec.tu-dresden.de
* Package name: ergo
Version : 3.2.1
Upstream Author : Elias Rudberg, Emanuel H. Rubensson, Pawel Salek
* URL : http://ergoscf.org
* License : GPL-3
Programming Lang: C++
Package: libsereal-decoder-perl
Severity: wishlist
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libsereal-decoder-perl
Version : 0.31
Upstream Author : Steffen Mueller, Yves Orton
* URL : http://search.cpan.org/dist/Sereal-Decoder/
* License :
Package: libsereal-encoder-perl
Owner: Alex Mestiashvili mailatgo...@gmail.com
Severity: wishlist
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libsereal-encoder-perl
Version : 0.31
Upstream Author : Steffen Mueller, Yves Orton
* URL : http
On 02/03/2013 11:27 PM, Bill Wohler wrote:
Alex Mestiashvili a...@biotec.tu-dresden.de wrote:
On 02/03/2013 07:13 AM, Bill Wohler wrote:
Package: libpam-abl
Version: 0.4.3-1
Severity: normal
Over the past couple of days, I've started getting a lot of the
following messages in my
On 02/03/2013 07:13 AM, Bill Wohler wrote:
Package: libpam-abl
Version: 0.4.3-1
Severity: normal
Over the past couple of days, I've started getting a lot of the
following messages in my log file:
Jan 30 08:41:01 olgas pam_abl[32671]: Invalid argument (22) while opening or
creating database
On 09/18/2012 01:14 PM, Carlos Alberto Lopez Perez wrote:
Hi Alex,
I was testing your initial package [1] and it looks good.
However I found two issues:
- perl-doc build-depend is missing
- you should use Architecture:all for packages that are
architecture-independent like
Thank you for submitting the bug report.
The upstream has completely rewritten the code, but the current version
- 0.5.0 has some problems. I keep an eye on the upstream's development
and will update the package as soon as the bugfree version is released.
The source code is moved to the
Hello,
just to confirm that I still see the issue with python 2.6.6-3+squeeze7.
Noticed by running iotop.
python
Python 2.6.6 (r266:84292, Dec 26 2010, 22:31:48)
[GCC 4.4.5] on linux2
Type help, copyright, credits or license for more information.
import ctypes
Traceback (most recent call last):
On 07/26/2012 12:39 AM, Ulrich Dangel wrote:
I just stumbled upon your ITP. Is there any progress so far?
Hi,
Unfortunately there is no progress so far from my side.
Are you interested in the development ?
Regards,
Alex
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The problem mentioned above seems to be fixed with gnome 1:3.0+8 .
Now after gdm prompt I can login and get panels on both screens.
But now I see another weird problem, each time I log in to gnome the number
of each item is increased.
For example I have 3 Application and Places items after 2
On 05/08/2012 01:36 PM, Lucas Nussbaum wrote:
Source: bowtie2
Version: 2.0.0-beta5-1
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20120508 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to
Package: array-info
Version: 0.15-1
Severity: normal
Hello,
Squeeze running on a HP DL380G7 with P410i controller with raid10 and rai50
configured.
with raid50 gives the follwing:
array-info -ld /dev/cciss/c0d1
*** glibc detected *** array-info: malloc(): memory corruption:
Hi Ben,
Do you think that bowtie2 can be fixed so it will work on architectures
other than i386 and amd64 ?
here is the build status:
https://buildd.debian.org/status/package.php?p=bowtie2
Thank you,
Alex
On 04/09/2012 02:41 AM, Nobuhiro Iwamatsu wrote:
Source: bowtie2
Version:
Package: gnome
Version: 1:3.0+7
Severity: important
I use dual screens with nvidia graphics card with proprietary driver
(xserver-xorg-video-nvidia 295.33-1 )
The config worked on squeeze. On wheezy it works for example with xfce, but not
with gnome or gnome-classic.
After start of gdm3 I
On 01/08/2012 06:25 PM, Christoph Egger wrote:
Package: src:libpam-abl
Version: 0.4.2-1
Severity: serious
Tags: sid wheezy
Justification: fails to build from source (but built successfully in the past)
Hi!
Your package failed to build on the buildds:
pam_abl.c: In function 'doshow':
Package: debian-maintainers
Please add Alexandre Mestiashvili as a Debian Maintainer.
Attached please find the jetring changeset.
Thank you ,
Alex
Recommended-By: Steffen Möller steffen_moel...@gmx.de
Agreement: http://lists.debian.org/debian-newmaint/2011/09/msg00050.html
Advocates:
Package: wnpp
Owner: Alex Mestiashvili a...@biotec.tu-dresden.de
Severity: wishlist
X-Debbug-CC: debian-p...@lists.debian.org
* Package name: libdancer-session-cookie-perl
Version : 0.15
Upstream Author : Alex Kapranoff
* URL : http://search.cpan.org/dist/Dancer
Hello ,
run in the same problem - LXC + debootstrap both on squeeze and sid
didn't work as expected .
Thanks to Alexandre , the patch solves the problem .
Alex
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On 08/13/2011 06:15 PM, Colin Watson wrote:
On Sat, Aug 13, 2011 at 02:55:51PM +0100, Ben Hutchings wrote:
There is a new network device naming scheme that uses physical location
(slot number or firmware-provided port number) to name PCI network
devices. So far this is implemented in
On 05/25/2011 04:35 AM, Charles Plessy wrote:
Dear Alex,
As the Perl transition is over, I have updated libbam to serve its headers in
/usr/include/samtools, and libbio-samtools-perl to search for them there.
You can go ahead with a similar change in cufflinks any time you like.
Have a nice
Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvilia...@biotec.tu-dresden.de
* Package name: cufflinks
Version : 1.0.2
Upstream Author : Cole Trapnell
* URL : http://cufflinks.cbcb.umd.edu
* License : BSL-1
Programming Lang: C++, Python
Description
The package can be found on mentors.debian.net:
- URL: http://mentors.debian.net/debian/pool/main/l/libpam-abl
- Source repository: deb-src http://mentors.debian.net/debian unstable main
contrib non-free
- dget
http://mentors.debian.net/debian/pool/main/l/libpam-abl/libpam-abl_0.4.1-1.dsc
I
On 05/07/2011 11:18 AM, Charles Plessy wrote:
Le Thu, May 05, 2011 at 11:41:09AM +0200, Alex Mestiashvili a écrit :
The only problem I see is that sam.h , bam.h ... have very short
and generic names .
for example: there are already packages with such headers :
libadplug-dev: /usr
Package: libbam-dev
Version: 0.1.15-1
Severity: wishlist
Tags: sid
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
-- no debconf information
samtools source pakckage provides libbam-dev package .
Package
Package: wnpp
Severity: wishlist
* Package name: biosdevname
Version : 0.3.7
Upstream Author : Matt Domsch matt_dom...@dell.com
* URL : http://linux.dell.com/biosdevname/
* License : GPL2
Programming Lang: C
Description : biosdevname in its simplest
Package: wnpp
Severity: wishlist
Owner: Alex Mestiashvilia...@biotec.tu-dresden.de
* Package name: seq-gen
Version : 1.3.2
Upstream Author : Andrew Rambautandrew.ramb...@zoo.ox.ac.uk
* URL : http://tree.bio.ed.ac.uk/software/seqgen/
* License : GPL
Package: wnpp
Owner: Alex Mestiashvili a...@biotec.tu-dresden.de
Severity: wishlist
*** Please type your report below this line ***
* Package name: authprogs
Version : 0.1
Upstream Author : Brian Hatch
* URL : http://www.hackinglinuxexposed.com/tools/authprogs/src
Package: wnpp
Owner: Alex Mestiashvili a...@biotec.tu-dresden.de
Severity: wishlist
*** Please type your report below this line ***
* Package name: transtermhp
Version : 2.0.7
Upstream Author : Carl Kingsford
* URL : http://transterm.cbcb.umd.edu/
* License
Subject: ITP: zodiac -- ZODIAC - Zeden's Organise DIsplay And Compute
Package: wnpp
Owner: Alex Mestiashvili a...@biotec.tu-dresden.de
Severity: wishlist
*** Please type your report below this line ***
* Package name: zodiac
Version : 6.5.0
Upstream Author : Nicola Zonta
I see this problem as well on current squeeze ,
just dist-upgraded from lenny . On lenny it was ok .
libfuse2 2.8.4-1.1
/lib/udev/rules.d/60-fuse-utils.rules: KERNEL==fuse, GROUP=fuse
but fuse group is missing after upgrade from /etc/group ..
Regards ,
lsb_release -r
Release:6.0
after fixing permissions for /dev/fuse the problem is still there - no
mountpoint is created in ~/.gvfs/
id shows that I am in fuse group
ls -l /dev/fuse
crw-rw 1 root fuse 10, 229 Feb 4 10:27 /dev/fuse
$gvfs-mount -l
skip
public_html on server -
Package: nagiosgrapher
Version: 1.6.1rc5-6
Severity: normal
/etc/nagiosgrapher/ngraph.d/standard/check_swap.ncfg has missing space
between define and ngraph.
-- System Information:
Debian Release: 5.0
APT prefers testing
APT policy: (500, 'testing')
Architecture: i386 (i686)
Kernel: Linux
Package: mysql-server-5.1
Version: 5.1.30-2
Severity: serious
Justification: no longer builds from source
*** Please type your report below this line ***
missing dependency g++ from control file
g++ -DDEFAULT_BASEDIR=\/usr\ -DDATADIR=\/var/lib/mysql\
-DDEFAULT_CHARSET_HOME=\/usr\
Package: linux-image-2.6.24-1-amd64
Version: 2.6.24-5
Severity: important
I realised that with new stable kernel 2.6.24-1-amd64 my storage two
times slower than on older stable 2.6.18-6 kernel
my controller :
0e:08.0 SCSI storage controller: LSI Logic / Symbios Logic SAS1068 PCI-X
Fusion-MPT
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