Bug#934254: [Debian-med-packaging] Bug#934254: Time to provide python3-mne package

these test files: https://github.com/mne-tools/mne-python/tree/master/mne/io/tests should be packaged to have the tests running. hope this helps Alex

Bug#934254: [Debian-med-packaging] Bug#934254: Time to provide python3-mne package

thanks Yarik for looking into this. Unless there is a bug it's perfectly possible to run the mne-python tests withing mayavi. All tests that require mayavi are decorated to be skipped if mayavi is not installed. See:

Bug#896025: Segfault in test suite of new upstream version (Was: python-mne FTBFS with python-matplotlib 2.2.2-1)

I pinged you on github I am pretty sure it's due to vtk/mayavi. I would suggest to package without the hard dependency on mayavi. if mayavi is not installed tests will be skipped and it should pass. hope this helps Alex

Bug#877344: [Debian-med-packaging] Bug#877344: Bug#877344: python-mne FTBFS: ERROR: Test ICA on raw and epochs

oh mayavi I would really be in favor of removing mayavi as a hard dependency. is it an option? Alex

Bug#877344: [Debian-med-packaging] Bug#877344: python-mne FTBFS: ERROR: Test ICA on raw and epochs

Hi Andreas, I don't have the bandwidth to address this sorry. Also mne 0.13 is now 2 versions behind where we are now. Nobody found the time to do the debian packaging for 0.14 and 0.15 so far. Really sorry about this. Best, Alex On Sun, Dec 3, 2017 at 6:45 PM, Andreas Tille

Bug#858486: [Debian-med-packaging] Bug#858486: python-mne: broken symlink: /usr/lib/python2.7/dist-packages/mne/html/d3.v3.min.js -> ../../../../../share/javascript/d3/d3.min.js

hi, python-mne does need the d3 package so yes one should have the: Depends: libjs-d3 can someone help me fixing this? thanks a lot Best, Alex On Wed, Mar 22, 2017 at 9:04 PM, Andreas Beckmann wrote: > Package: python-mne > Version: 0.13.1+dfsg-2 > Severity: serious >

Bug#813982: [Debian-med-packaging] Bug#813982: python-mne: FTBFS: IndexError: an index can only have a single ellipsis ('...')

Hi, we identified the problem. We'll send a fix ASAP. It's an issue due to an old version of numpy. Best, Alex On Sun, Feb 7, 2016 at 10:44 AM, Chris Lamb wrote: > Source: python-mne > Version: 0.10.1+dfsg-1 > Severity: serious > Justification: fails to build from source >

Bug#813982: [Debian-med-packaging] Bug#813982: python-mne: FTBFS: IndexError: an index can only have a single ellipsis ('...')

Hi, we identified the problem. We'll send a fix ASAP. It's an issue due to an old version of numpy. Best, Alex

Bug#800135: [Debian-med-packaging] Bug#800135: python-mne: FTBFS: /usr/share/openmpi/help-mpi-errors.txt: No such file or directory

hi, sorry for the delay. Jaakko in CC has more time than me and is working on the packaging of our latest release v0.10. We are hoping to fix it with the new package. To avoid future issues with Mayavi we have also decided to remove it from the strong deps of python-mne. We'll probably push a

Bug#785627: Mayavi2 maintenance [python-mne is marked for autoremoval from testing]

hi Andreas, thanks for clarifying. I'll take care of packaging of v0.9 just released asap. I'll remove mayavi from Build-Depends to be safe. Alex On Wed, May 27, 2015 at 10:09 AM, Andreas Tille andr...@an3as.eu wrote: Hi Alexandre, On Wed, May 27, 2015 at 09:32:39AM +0200, Alexandre Gramfort

Bug#785627: Mayavi2 maintenance [python-mne is marked for autoremoval from testing]

Hi Andreas, I don't know what I can do about mayavi2 packaging. To avoid removing python-mne from debian-science one option is to remove it from depends as mayavi2 is a weak dependency of python-mne. 95% of python-mne works fine without mayavi. what do you think? let me know Best, Alex On

Bug#768730: [Debian-med-packaging] Bug#768730: Bug#768730: python-mne REMOVED from testing

hey, ok -- god blessing from release team for uploading patched 0.8.6 cool. got stuck now though since with sid's version of pandas (never migrated to jessie since some builds were failing... yeah... busy busy) mne build was failing: pandas is a weak dependency of mne. mne works without

Bug#768730: Bug#768730: python-mne REMOVED from testing

hi, I have not fully understood your conversation whether release team was contacted about 0.8.6 or not. I understood yes. I also failed to understand the issue with failed tests in connection with pandas. latest pandas release makes a test failing. So I do not know whether you expect

Bug#768730: [Debian-med-packaging] Bug#768730: python-mne REMOVED from testing

/0.8.4 branch or something. Alex On Tue, Dec 9, 2014 at 2:35 PM, Yaroslav Halchenko deb...@onerussian.com wrote: On Tue, 09 Dec 2014, Alexandre Gramfort wrote: hi, yes I have seen this sad news. Let me know what I can do to help. I've sent the patch to fix v0.8.4 in a previous thread

Bug#768730: python-mne REMOVED from testing

hi, yes I have seen this sad news. Let me know what I can do to help. I've sent the patch to fix v0.8.4 in a previous thread. Otherwise we could package v0.8.6 which hopefully fixes the error. Best, Alex On Tue, Dec 9, 2014 at 8:47 AM, Andreas Tille andr...@an3as.eu wrote: Hi, seems we

Bug#768730: [Debian-med-packaging] Bug#768730: [lu...@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures]

hi, FYI here is a clean commit that should fix the problem: https://github.com/mne-tools/mne-python/commit/b9d4df78db7aaeda1feb58c18b0071934de2361e otherwise the patch attached skips the tests (quick fix). Hope this helps Alex On Tue, Nov 11, 2014 at 7:16 AM, Andreas Tille

Bug#768730: [lu...@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures]

hi Andreas, can you please have a look into this? Please not that the freeze rules do not allow fixing this in a new upstream version but we rather need to find a minimal patch. If you do not have a better idea skipping the affected tests to solve this issue. we should skip the tests. How

Bug#768730: [Debian-med-packaging] Bug#768730: [lu...@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures]

Tille andr...@an3as.eu wrote: On Mon, Nov 10, 2014 at 11:07:23AM +0100, Alexandre Gramfort wrote: hi Andreas, can you please have a look into this? Please not that the freeze rules do not allow fixing this in a new upstream version but we rather need to find a minimal patch. If you do

Bug#759916: MNE v0.8 packaging

hi Andreas, We also took care together of jquery with a patch that looks for local files instead. There is the remaining issue of boostrap v3 which does not seem to be packaged currently. d3 and mpld3 min files are stripped out of the source without harming the package. Good. So the

Bug#761328: [Debian-med-packaging] Bug#761328: RFP: python-mpld3 -- a D3 viewer for matplotlib

indeed python-mne latest uses it as well as bootstrap 3.0. I would be great to have those packaged. Thanks Martin. Best, Alex On Fri, Sep 12, 2014 at 11:44 PM, W. Martin Borgert deba...@debian.org wrote: Package: wnpp Severity: wishlist * Package name: python-mpld3 Version :

Bug#759916: MNE v0.8 packaging

currently. d3 and mpld3 min files are stripped out of the source without harming the package. So the remaining issue is just bootstrap. Alex On Wed, Sep 3, 2014 at 11:06 AM, Andreas Tille andr...@an3as.eu wrote: Hi Alexandre, On Tue, Sep 02, 2014 at 06:01:03PM +0200, Alexandre Gramfort wrote

Bug#759916: MNE v0.8 packaging

wonder whether you might be able to reproduce this at your side or whether I should attach a full build log. Kind regards Andreas. On Sun, Aug 31, 2014 at 09:00:57PM +0200, Alexandre Gramfort wrote: hi, sorry for the delay I was little online over the last weeks. To summarize

Bug#759916: [Debian-med-packaging] Bug#759916: python-mne: FTBFS: tests failed

Source: python-mne Version: 0.7.3-1 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20140830 qa-ftbfs Justification: FTBFS on amd64 hi, the bug is related to a network access failure. It's not serious and can be avoided by skipping the test by setting

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

-mne (0.7.1-1) unstable; urgency=low [ Alexandre Gramfort ] diff --git a/debian/control b/debian/control index b85808a..5ab70eb 100644 --- a/debian/control +++ b/debian/control @@ -25,7 +25,7 @@ Standards-Version: 3.9.5 Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/python

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi, I just gave a try to apt-get install python-mne on a fresh neurodebian VM downloaded at: http://neuro.debian.net/vm.html and I get the error below. any idea what's going on? @yarik can you reproduce? Thanks, Alex -- brain@neurodebian:~$ sudo apt-get install python-mne Reading package

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

or may be you would prefer to adjust that one to stay 2.6 compatible? I guess that would be better as it should stay compatible with 2.6 ... it's a mistake on our side... I'll setup a jenkins on 2.6 to avoid this issue in the future. also for testing, I am usually trying to test with all

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, I just pushed to the repo version 0.7.1 with: git import-orig --pristine-tar ../mne-python_0.7.1.orig.tar.gz let me know if we're good. Best, Alex -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Bug#733270: mne python doc package

I'll try to add it soon. Any help welcome though :) cheers, Alex -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Bug#733271: missing test files

hi, do you have any idea why this happens? these files are excluded from the manifest to avoid a huge upload to pypi but could be shipped on debian. Any idea how to fix this? thanks Alex -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of unsubscribe.

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi guys, FYI I just tagged v0.7.1 on github. For some obscure reasons I still depend on Andreas to update the package on debian.org... thanks Alex On Thu, Nov 28, 2013 at 3:52 PM, Yaroslav Halchenko y...@debian.org wrote: On Wed, 27 Nov 2013, Alexandre Gramfort wrote: Let me know when

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi, Great. I have importet the new upstream tarball and pushed including pristine-tar. perfect Done. Please remind that also the Git repository is now ssh://git.debian.org/git/debian-med/python-mne.git I updated my .git/config If I were you I would stop maintaining this. People

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, we have now released mne-python. See tag v0.7 Packaging is fine. The only change I would propose to move the VCS from mne-python to python-mne and also name the source package python-mne. This would be way more comfortable from my personal feeling how things should be. feel

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, Well, having a target in debian/rules is not sufficient. You could even put a target take_over_world_domination and finally nothing will happen if you have no rule that depends from this target. :-) indeed :) I just merged this target into override_dh_installman and now it is

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

branch so you can give it a try too. thanks again for all your help Alex On Mon, Nov 25, 2013 at 9:47 AM, Alexandre Gramfort alexandre.gramf...@m4x.org wrote: hi Andreas, Well, having a target in debian/rules is not sufficient. You could even put a target take_over_world_domination and finally

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

automatcally by the manpages target in debian/rules it's using help2man. Best, Alex Kind regards Andreas. On Sat, Nov 23, 2013 at 10:46:07PM +0100, Alexandre Gramfort wrote: hi, I adapted packaging in Git to 0.7~rc3 and we are down to only one failed test

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, Hmmm, I tried the same and it went fine so far (see latest commit; weird here is my git config: gramfort@tsilinuxd74:mne-python(master)$ cat .git/config [core] repositoryformatversion = 0 filemode = true bare = false logallrefupdates = true [remote origin] fetch =

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi, I adapted packaging in Git to 0.7~rc3 and we are down to only one failed test: - TOTAL 20945 817361% -- Ran 290 tests

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

are working now in 0.7~rc1 Close ITP bug in changelog which should be done anyway and currently helps machine readable gatherer to get all needed info Alexandre Gramfort (1): Imported Upstream version 0.7~rc2 Andreas Tille (2): Imported Upstream version 0.6 Imported

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

uscan --verbose --force-download git import-orig --pristine-tar mne-python-0.7rc1.tar.gz but it does not seem to work. It refuses to find the tar.gz You need to call this when beeing inside the Git repository dir but usually the tarball is somewhere else (after using uscan it should be

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, Yep - since yesterday evening. That's a good timing. ;-) good You might like to try: gbp-clone ssh://git.debian.org/git/debian-med/mne-python.git to check out what I injected into the Debian Med git. Please be not astonished about the fact that I was using version 0.6.

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi, thanks Andreas and Yaroslav for this lively discussion :) To be honest, I have no opinion of what's the best way of doing things and I don't really read between the lines in your comments. I also don't see me understanding all the details of debian packaging as I am not likely to do this

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

hi Andreas, On Tue, Nov 05, 2013 at 05:52:29PM +0100, Alexandre Gramfort wrote: please have a look at our debian branch: https://github.com/mne-tools/mne-python/tree/debian Looks good from quick view without doing an actual build. I have attached a fix for the debian/watch file - the file

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

Package: wnpp Severity: wishlist Owner: Alexandre Gramfort alexandre.gramf...@m4x.org * Package name: python-mne Version : 0.7.git Upstream Author : Alexandre Gramfort alexandre.gramf...@m4x.org * URL : https://github.com/mne-tools/mne-python * License : BSD

Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

to contact us via our (see CC) mailing list if something might remain unclear. Kind regards Andreas. [1] http://debian-med.alioth.debian.org/docs/policy.html On Tue, Nov 05, 2013 at 04:38:42PM +0100, Alexandre Gramfort wrote: Package: wnpp Severity: wishlist Owner: Alexandre Gramfort