Bug#1086730: gsl FTCBFS: explicit toolchain dependencies not satisfiable

2024-11-05 Thread Dirk Eddelbuettel
Hi Helmut, On 5 November 2024 at 06:28, Helmut Grohne wrote: | On Mon, Nov 04, 2024 at 04:26:23PM -0600, Dirk Eddelbuettel wrote: | > On 4 November 2024 at 22:18, Helmut Grohne wrote: | > | Source: gsl | > | Version: 2.8+dfsg-4 | > | Tags: patch | > | User: debian-cr...@l

Bug#1086730: gsl FTCBFS: explicit toolchain dependencies not satisfiable

2024-11-04 Thread Dirk Eddelbuettel
Hallo Helmut, On 4 November 2024 at 22:18, Helmut Grohne wrote: | Source: gsl | Version: 2.8+dfsg-4 | Tags: patch | User: debian-cr...@lists.debian.org | Usertags: cross-satisfiability | | gsl cannot be cross built from source, because its dependencies on gcc | and binutils cannot satisfied. Th

Bug#1086312: rmpi: FTBFS: configure: error: Cannot find orted. Rmpi needs orted to run.

2024-10-29 Thread Dirk Eddelbuettel
On 29 October 2024 at 15:40, Dirk Eddelbuettel wrote: | | Hi Santiago, | | On 29 October 2024 at 21:05, Santiago Vila wrote: | | Package: src:rmpi | | Version: 0.7-2.1-1 | | Severity: serious | | Tags: ftbfs | | | | Dear maintainer: | | | | During a rebuild of all packages in unstable, your

Bug#1086312: rmpi: FTBFS: configure: error: Cannot find orted. Rmpi needs orted to run.

2024-10-29 Thread Dirk Eddelbuettel
Hi Santiago, On 29 October 2024 at 21:05, Santiago Vila wrote: | Package: src:rmpi | Version: 0.7-2.1-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: | | -

Bug#1086206: gsl: CVE-2024-50610

2024-10-29 Thread Dirk Eddelbuettel
t 28, 2024 at 04:12:56PM -0500, Dirk Eddelbuettel wrote: | > | > Hi Salvatore, | > | > On 28 October 2024 at 21:55, Salvatore Bonaccorso wrote: | > | Source: gsl | > | Version: 2.8+dfsg-3 | > | Severity: important | > | Tags: security upstream | > | Forwarded: https://li

Bug#1086206: gsl: CVE-2024-50610

2024-10-28 Thread Dirk Eddelbuettel
Hi Salvatore, On 28 October 2024 at 21:55, Salvatore Bonaccorso wrote: | Source: gsl | Version: 2.8+dfsg-3 | Severity: important | Tags: security upstream | Forwarded: https://lists.gnu.org/archive/html/bug-gsl/2024-09/msg0.html | X-Debbugs-Cc: car...@debian.org, Debian Security Team | |

Bug#1083265: r-cran-deriv: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 18:04, benatt...@gezapig.nl wrote: | Source: r-cran-deriv | Version: 4.1.6-1 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=deriv | To. | https://cran.r-project.org/package=Deriv Thank you -- also fixed in my sources. Di

Bug#1083266: r-cran-rcppspdlog: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 18:08, benatt...@gezapig.nl wrote: | Source: r-cran-rcppspdlog | Version: 0.0.18-1 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=rcppspdlog | To. | https://cran.r-project.org/package=RcppSpdlog Thank you -- also fixed in

Bug#1083263: r-cran-rcppcctz: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 17:57, benatt...@gezapig.nl wrote: | Source: r-cran-rcppcctz | Version: 0.2.12-1 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=rcppcctz | To. | https://cran.r-project.org/package=RcppCCTZ Thank you -- also fixed in my so

Bug#1083264: r-cran-rcppdate: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 18:01, benatt...@gezapig.nl wrote: | Source: r-cran-rcppdate | Version: 0.0.3-2 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=rcppdate | To. | https://cran.r-project.org/package=RcppDate Thank you -- also fixed in my sou

Bug#1083257: r-cran-deoptimr: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 17:08, benatt...@gezapig.nl wrote: | Source: r-cran-deoptimr | Version: 1.1-3-1 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=deoptimR | To. | https://cran.r-project.org/package=DEoptimR Thank you again. I have also corr

Bug#1083244: r-cran-doby: homepage defunct

2024-10-03 Thread Dirk Eddelbuettel
On 3 October 2024 at 16:05, benatt...@gezapig.nl wrote: | Source: r-cran-doby | Version: 4.6.22-2 | Severity: minor | | | Small mistake homepage field. | This. | https://cran.r-project.org/package=doby | To. | https://cran.r-project.org/package=doBy Thank you for the heads-up. I corrected this

Bug#1081767: r-cran-gridextra: homepage defunct

2024-09-14 Thread Dirk Eddelbuettel
Thanks, fixed in my sources and acknowledged but will wait for next regular package build to upload. r-cran-gridextra (2.3-4) unstable; urgency=medium [ unreleased ] * debian/control: Correct one char in homepage URL (closes: #1081767) -- Dirk -- dirk.eddelbuettel.com | @eddel

Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
Hi Paul, On 6 September 2024 at 17:24, Paul Gevers wrote: | Hi Dirk, | | On 06-09-2024 15:19, Dirk Eddelbuettel wrote: | > If you think there is anything I could or should do let me know. I packaged | > the newest upstream version, and looked after its dependencies. | | You could che

Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
On 6 September 2024 at 14:36, Paul Gevers wrote: | Source: r-cran-pbkrtest | Version: 0.5.2-2 | Severity: serious | Control: close -1 0.5.3-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#1080300: r-cran-manipulatewidgets: wrong source name ?

2024-09-01 Thread Dirk Eddelbuettel
On 1 September 2024 at 19:24, Ben Tris wrote: | Source: r-cran-manipulatewidgets | Version: 0.11.1-3 | Severity: normal | X-Debbugs-Cc: benatt...@gezapig.nl | | Dear Maintainer, | | was checking the website, then going to cran contrib to check | | https://cran.r-project.org/package=manipulateW

Bug#1080038: r-base: Please fix java dependency for hurd-amd64

2024-08-29 Thread Dirk Eddelbuettel
On 30 August 2024 at 00:57, Samuel Thibault wrote: | Dirk Eddelbuettel, le jeu. 29 août 2024 17:38:07 -0500, a ecrit: | > Sure. You had already sent it to me as #1077943 and we had concluded then | > that it did not merit an upload but could wait til the next upload. | | Oops, sorry

Bug#1080038: r-base: Please fix java dependency for hurd-amd64

2024-08-29 Thread Dirk Eddelbuettel
On 30 August 2024 at 00:09, Samuel Thibault wrote: | Source: r-base | Version: 4.4.1-1 | Severity: important | Tags: patch | | Hello, | | The condition for the java dependency needs to be extended to hurd-amd64 | (and further hurd ports), as the attached patch does, could you apply | it? Sure.

Bug#1079413: gretl: please migrate from deprecated gtksourceview3 to gtksourceview4 (or 5)

2024-08-28 Thread Dirk Eddelbuettel
On 28 August 2024 at 15:18, Dirk Eddelbuettel wrote: | | On 28 August 2024 at 17:29, Simon McVittie wrote: | | On Wed, 28 Aug 2024 at 10:55:06 -0500, Dirk Eddelbuettel wrote: | | > I am still blocked on the build because pbuilder loops with | | > | | > The following packages h

Bug#1079413: gretl: please migrate from deprecated gtksourceview3 to gtksourceview4 (or 5)

2024-08-28 Thread Dirk Eddelbuettel
On 28 August 2024 at 17:29, Simon McVittie wrote: | On Wed, 28 Aug 2024 at 10:55:06 -0500, Dirk Eddelbuettel wrote: | > I am still blocked on the build because pbuilder loops with | > | > The following packages have unmet dependencies: | > dbus : Depends: usr-is-merged (>= 38~

Bug#1079413: gretl: please migrate from deprecated gtksourceview3 to gtksourceview4 (or 5)

2024-08-28 Thread Dirk Eddelbuettel
Simon, I may need an assist from you. I am still blocked on the build because pbuilder loops with The following packages have unmet dependencies: dbus : Depends: usr-is-merged (>= 38~) but it is not going to be installed The following actions will resolve these dependencies: Install the

Bug#1079526: sprng: lost gmp symbols cause ftbfs in tree-puzzle

2024-08-26 Thread Dirk Eddelbuettel
On 24 August 2024 at 11:45, Étienne Mollier wrote: | Source: sprng | Version: 2.0a-15 | Severity: serious | Tags: patch upstream | Justification: causes reverse dependency to ftbfs | Control: affects -1 tree-puzzle | Control: block 1075584 by -1 | | Dear Maintainer, | | dh_shlibdeps reports mul

Bug#1079413: gretl: please migrate from deprecated gtksourceview3 to gtksourceview4 (or 5)

2024-08-23 Thread Dirk Eddelbuettel
On 23 August 2024 at 09:07, Simon McVittie wrote: | Source: gretl | Version: 2024b-1 | Tags: trixie sid upstream | Control: block 996689 by -1 | User: pkg-gnome-maintain...@lists.alioth.debian.org | Usertags: oldlibs | | gtksourceview3 was superseded in 2018 by gtksourceview4 (a new major | upst

Bug#1073251: rpy2: please add support for loong64

2024-08-17 Thread Dirk Eddelbuettel
On 16 August 2024 at 09:56, Dirk Eddelbuettel wrote: | | Ok, possibly one last minute issue. I am traveling now but will sort this out | once back home in a few days. I misread the console log -- it went out the right way and it is all good now. I am truly sorry again for letting this lapse

Bug#1073251: rpy2: please add support for loong64

2024-08-16 Thread Dirk Eddelbuettel
Ok, possibly one last minute issue. I am traveling now but will sort this out once back home in a few days. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1073251: rpy2: please add support for loong64

2024-08-16 Thread Dirk Eddelbuettel
On 13 August 2024 at 01:46, wuruilong wrote: | Source: rpy2 | Version: 3.5.16-2 | Followup-For: Bug #1073251 | X-Debbugs-Cc: wuruil...@loongson.cn | | Dear Maintainer, | | It's been a while and I see rpy2 hasn't merged yet. Is there some other problem encountered? Wow. My bad. It looks like I

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-08-10 Thread Dirk Eddelbuettel
On 10 August 2024 at 14:51, Sebastian Ramacher wrote: | On 2024-08-03 14:54:29 -0500, Dirk Eddelbuettel wrote: | > | > On 3 August 2024 at 21:07, Sebastian Ramacher wrote: | > | On 2024-08-03 20:12:12 +0200, Sebastiaan Couwenberg wrote: | > | > On 8/3/24 7:56 PM, Sebastian

Bug#1077942: Bug#1077943: Bug#1077942: bash: unable to execute installed bash package post-installation script (/var/lib/dpkg/info/bash.postinst): No such file or directory

2024-08-04 Thread Dirk Eddelbuettel
Manually resending to 1077942 -- you had accidentally sent it to 1077943 which is one of mine and unrelated. -- Dirk On 5 August 2024 at 02:05, Chris Hofstaedtler wrote: | On Sun, Aug 04, 2024 at 01:56:33PM -0700, Otto Kekäläinen wrote: | > dpkg (subprocess): unable to execute installed bash p

Bug#1077943: r-base: Please disable java on hurd-amd64 too

2024-08-04 Thread Dirk Eddelbuettel
Hi again, On 4 August 2024 at 23:54, Samuel Thibault wrote: | Dirk Eddelbuettel, le dim. 04 août 2024 16:45:08 -0500, a ecrit: | > On 4 August 2024 at 23:18, Samuel Thibault wrote: | > | openjdk is not available on hurd-amd64 either, making r-base currently | > | unbuildable there,

Bug#1077943: r-base: Please disable java on hurd-amd64 too

2024-08-04 Thread Dirk Eddelbuettel
On 4 August 2024 at 23:18, Samuel Thibault wrote: | Source: r-base | Version: 4.4.1-1 | Severity: important | Tags: patch | | Hello, | | openjdk is not available on hurd-amd64 either, making r-base currently | unbuildable there, could you apply the attach patch, which uses the -any | wildcard?

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-08-03 Thread Dirk Eddelbuettel
On 3 August 2024 at 21:07, Sebastian Ramacher wrote: | On 2024-08-03 20:12:12 +0200, Sebastiaan Couwenberg wrote: | > On 8/3/24 7:56 PM, Sebastian Ramacher wrote: | > > On 2024-07-31 09:50:40 +0200, Sebastiaan Couwenberg wrote: | > > > On 7/30/24 5:17 AM, Sebastiaan Couwenberg wrote: | > > > > No

Bug#1077743: sprng: FTBFS in trixie, has undeclared build-depends on gcc-14

2024-08-01 Thread Dirk Eddelbuettel
On 1 August 2024 at 13:11, Santiago Vila wrote: | Package: src:sprng | Version: 2.0a-14 | Severity: serious | Tags: ftbfs patch | | Dear maintainer: | | The current package FTBFS in trixie: | | https://tests.reproducible-builds.org/debian/rbuild/trixie/amd64/sprng_2.0a-14.rbuild.log.gz | | m

Bug#1074993: ggobi: ftbfs with GCC-14

2024-07-29 Thread Dirk Eddelbuettel
Now fixed in 2.1.12-1, but I forgot to add a 'Closes: ...' in time. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 20:52, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 3:33 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 15:11, Cottrell, Allin wrote: | > | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | [...] | > | > | > ../lib/src/in

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 15:11, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | > | Source: gretl | > | Version: 2024b-1 | > | Severity: serious | > | Justification: FTBFS | >

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | Source: gretl | Version: 2024b-1 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | User: lu...@debian.org | Usertags: ftbfs-20240727 ftbfs-trixie | | Hi, | | During a rebuild of all packages in sid, your package failed to bui

Bug#1077335: multcomp: Please make another source-only upload for testing migration

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 11:30, Boyuan Yang wrote: | Source: multcomp Version: 1.4-26-1 Severity: important X-Debbugs-CC: | e...@debian.org Dear Debian multcomp package maintainer, Your latest | upload of package multcomp was not a source-only upload. As a result, it | was blocked from migrating to

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-25 Thread Dirk Eddelbuettel
On 25 July 2024 at 13:41, Paul Gevers wrote: | On 25-07-2024 13:22, Dirk Eddelbuettel wrote: | > I have built it, but in haste and error left the source-only flag from a | > recent upload to NEW on so I have to wait for the queue to purge before I can | > re-upload the corrected so

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-25 Thread Dirk Eddelbuettel
On 25 July 2024 at 12:56, Emilio Pozuelo Monfort wrote: | On 25/07/2024 12:48, Dirk Eddelbuettel wrote: | > Anything we/I need to do or will this work as an auto-transition? I presume | > we need a basic ben fil

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-25 Thread Dirk Eddelbuettel
On 25 July 2024 at 10:50, Emilio Pozuelo Monfort wrote: | Control: tags -1 confirmed | | On 21/07/2024 11:09, Yavor Doganov wrote: | > On Fri, 12 Jul 2024 22:58:25 +0300, | > Lucas Nussbaum wrote: | >> If it ends up that you cannot do it, let me know and I can do it. | > | > Fortunately this wa

Bug#1076808: ITP: r-cran-doby -- GNU R package for Groupwise Statistics, LSmeans, Linear Estimates, Utilities

2024-07-23 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-doby Version : 4.6.22 Upstream Author : Søren Højsgaard and Ulrich Halekoh * URL or Web page : https://cran.r-project.org/package=doBy * License : GPL-2+ Description : GNU R package

Bug#1076632: ITP: r-cran-microbenchmark -- GNU R package for Accurate Timing Functions

2024-07-20 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-microbenchmark Version : 1.4.10 Upstream Author : Olaf Mersmann * URL or Web page : https://cran.r-project.org/package=microbenchmark * License : BSD-2-clause Description : GNU R

Bug#1076615: r-cran-metamix: autopkgtest regression with rmpi 0.7-2-2 (armel,armhf,i386)

2024-07-19 Thread Dirk Eddelbuettel
Source: r-cran-metamix Version: 0.3-2 Severity: serious Dear Maintainers, Your package r-cran-metamix is showing an autopkg regression with the updated rmpi (aka r-cran-rmpi) package I maintain, and is blocking it. Upstream at CRAN 32 bit operating systems are no longer checked (and one go furt

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-11 Thread Dirk Eddelbuettel
On 11 July 2024 at 19:44, Yavor Doganov wrote: | Dirk Eddelbuettel wrote: | > On 11 July 2024 at 17:37, Lucas Nussbaum wrote: | > | Since we are only talking about approximately 294 source packages to | > | rebuild, isn't that something that you could do on your own machine? | &g

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-11 Thread Dirk Eddelbuettel
On 11 July 2024 at 17:37, Lucas Nussbaum wrote: | On 11/07/24 at 07:00 -0500, Dirk Eddelbuettel wrote: | > | > Salut Lucas, | > | > On 23 June 2024 at 13:09, Sebastian Ramacher wrote: | > | On 2024-06-21 09:51:39 -0500, Dirk Eddelbuettel wrote: | > | > | > | > On

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-07-11 Thread Dirk Eddelbuettel
Salut Lucas, On 23 June 2024 at 13:09, Sebastian Ramacher wrote: | On 2024-06-21 09:51:39 -0500, Dirk Eddelbuettel wrote: | > | > On 21 June 2024 at 05:34, Dirk Eddelbuettel wrote: | > | | > | On 21 June 2024 at 10:43, Sebastian Ramacher wrote: | > | | Control: t

Bug#1076114: ITP: r-cran-deriv -- GNU R package for Symbolic Differentiation

2024-07-10 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-deriv Version : 4.1.3 Upstream Author : Andrew Clausen and Serguei Sokol * URL or Web page : https://cran.r-project.org/package=Deriv * License : GPL-3 Description : GNU R package to

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
On 9 July 2024 at 18:42, Adrian Bunk wrote: | On Tue, Jul 09, 2024 at 10:34:43AM -0500, Dirk Eddelbuettel wrote: | > | > Adrian, | | Hi Dirk, | | > Will the patch to configure.ac, with the build system as it is, ensure | > autoconf is called or should I do that manually and henc

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
Adrian, Will the patch to configure.ac, with the build system as it is, ensure autoconf is called or should I do that manually and hence also patch configure? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 9 July 2024 at 04:10, Adrian Bunk wrote: | Control: tags -1 patch | | On Mon, Jul 08, 2024 at 03:30:17PM -0500, Dirk Eddelbuettel wrote: | > | > On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | > | Source: rmpi | > | Version: 0.7-2-1 | > | Severity: serious |

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | Source: rmpi | Version: 0.7-2-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | | https://buildd.debian.org/status/fetch.php?pkg=rmpi&ar

Bug#1071523: r-cran-spatstat.geom: autopkgtest regression in testing

2024-07-02 Thread Dirk Eddelbuettel
On 3 July 2024 at 07:18, Andreas Tille wrote: | Am Tue, Jul 02, 2024 at 09:32:43PM + schrieb Graham Inggs: | > > We did not implemented any hooks to realise this yet. | > | > Wouldn't removing the following line from debian/control do it? | > | > Testsuite: autopkgtest-pkg-r | | Well, sure

Bug#1074529: r-cran-dimred: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:17, Graham Inggs wrote: | Source: r-cran-dimred | Version: 0.2.6-1 | Severity: serious | Tags: trixie sid | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-dimred's autopkgtest regresses when t

Bug#1074528: r-bioc-eir: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:13, Graham Inggs wrote: | Source: r-bioc-eir | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-eir's autopkgtest regresses when tested with r-base 4.4

Bug#1073061: r-base: CVE-2024-27322 execution of arbitrary code

2024-06-25 Thread Dirk Eddelbuettel
On 25 June 2024 at 21:32, Moritz Mühlenhoff wrote: | Am Wed, Jun 12, 2024 at 05:00:25PM -0500 schrieb Dirk Eddelbuettel: | > | > On 12 June 2024 at 23:46, Moritz Mühlenhoff wrote: | > | Dirk Eddelbuettel wrote: | > | > Just FYI the view of R Core (upstream) and the R Foundat

Bug#1072650: RM: quantlib-python [riscv64] -- RoM

2024-06-21 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal As of the last release, quantlib-python no longer builds on riscv64 within the 600 minute window. The source package quantlib-swig, using source package libquantlib-dev, puts considerable strain on the C++ compiler and system and several architectures hav

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-06-21 Thread Dirk Eddelbuettel
On 21 June 2024 at 05:34, Dirk Eddelbuettel wrote: | | On 21 June 2024 at 10:43, Sebastian Ramacher wrote: | | Control: tags -1 moreinfo | | | | On 2024-05-27 12:01:45 -0500, Dirk Eddelbuettel wrote: | | > | | > Package: release.debian.org | | > Severity: normal | | > User: re

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-06-21 Thread Dirk Eddelbuettel
On 21 June 2024 at 10:43, Sebastian Ramacher wrote: | Control: tags -1 moreinfo | | On 2024-05-27 12:01:45 -0500, Dirk Eddelbuettel wrote: | > | > Package: release.debian.org | > Severity: normal | > User: release.debian@packages.debian.org | > Usertags: transition | > |

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-20 Thread Dirk Eddelbuettel
On 20 June 2024 at 12:16, Bo YU wrote: | hi, | | On Mon, Jun 17, 2024 at 7:16 AM Bo YU wrote: | > | > Hi, | > | > On Mon, Jun 17, 2024 at 6:41 AM Dirk Eddelbuettel wrote: | > > | > > | > > Hi Paul, | > > | > > Thanks for the prompt and detailed r

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Hi Paul, Thanks for the prompt and detailed reply. On 16 June 2024 at 16:13, Paul Gevers wrote: | Hi Dirk, | | On 16-06-2024 2:42 p.m., Dirk Eddelbuettel wrote: | > I may need a hgand with riscv64. | | That's normally a question to the porters, in CC now, so they can have a

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Paul, Graham, I may need a hgand with riscv64. The 1.34-1 revision needed some build changes I had done poorly in such a way that the -O0 no longer applied to some arches, this has been fixed in 1.34-2 so armel, armhf, i386 are good. But riskv64 still times out. Can we expand the build-time wi

Bug#1073251: rpy2: please add support for loong64

2024-06-16 Thread Dirk Eddelbuettel
On 15 June 2024 at 07:47, wuruilong wrote: | Source: rpy2 | Version: 3.5.16-2 | Severity: normal | Tags: patch | X-Debbugs-Cc: wuruil...@loongson.cn | User: debian-loonga...@lists.debian.org | Usertags: loong64 | | Dear Maintainer, | | rpy2 compiled incorrectly on loongarch, the attachment has

Bug#1073061: r-base: CVE-2024-27322 execution of arbitrary code

2024-06-12 Thread Dirk Eddelbuettel
On 12 June 2024 at 23:46, Moritz Mühlenhoff wrote: | Dirk Eddelbuettel wrote: | > Just FYI the view of R Core (upstream) and the R Foundation (I'm on the board) | > is that this is a nothingburger. We would love for the CVE to be retracted | > but nobody (among a team of volunteer

Bug#1073061: r-base: CVE-2024-27322 execution of arbitrary code

2024-06-12 Thread Dirk Eddelbuettel
On 12 June 2024 at 17:20, Vincent Danjean wrote: | Package: r-base | Version: 3.5.2-1 | Severity: important | Tags: security upstream | X-Debbugs-Cc: Debian Security Team | | I create this bug in order to track the fix of this CVE in pre-trixie Debian | releases. I mark it as found in buster

Bug#1072979: beast-mcmc - build-dependencies unsatisfiable on i386.

2024-06-11 Thread Dirk Eddelbuettel
On 11 June 2024 at 10:05, Peter Green wrote: | Package: beast-mcmc | Version: 1.10.4+dfsg-5 | Severity: serious | x-debbugs-cc: r-cran-rj...@packages.debian.org | | beast-mcmc build-depends on r-cran-rjava, which is no longer available | on i386. It appears that the package failed to build, and

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues in r-cran-popepi which needs an update

2024-06-06 Thread Dirk Eddelbuettel
On 6 June 2024 at 08:22, Johannes Ranke wrote: | Am Mittwoch, 5. Juni 2024, 22:27:09 CEST schrieb Dirk Eddelbuettel: | > On 5 June 2024 at 21:55, Paul Gevers wrote: | > | Source: survival | > | Version: 3.5-8-1 | > | Severity: serious | > | Control: close -1 3.6-4-1 | >

Bug#1072661: r-cran-popepi: Please update to current version

2024-06-05 Thread Dirk Eddelbuettel
Source: r-cran-popepi Version: 0.4.11+dfsg-1 This package is holding CRAN package 'survival' (aka r-cran-survival, a package listed as part of the 'recommended' set by R Core and hence in r-recommended) back from migrating and is now threatening removal. See #1072648 for details. And that is of

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:57, Paul Gevers wrote: | Source: quantlib-swig | Version: 1.33-1 | Severity: serious | Control: close -1 1.34-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages th

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:55, Paul Gevers wrote: | Source: survival | Version: 3.5-8-1 | Severity: serious | Control: close -1 3.6-4-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages that are ou

Bug#1072322: r-cran-gdata: CVE-2023-7101 due to unpatched ParseExcel/Utility.pm

2024-05-31 Thread Dirk Eddelbuettel
Mark, On 31 May 2024 at 22:33, Voorhies, Mark wrote: | Package: r-cran-gdata | Version: 2.18.0.1-1 | Severity: normal | | Dear Maintainer, | | I believe r-cran-gdata 2.18.0.1-1 in Debian 12 is vulnerable to CVE-2023-7101 | due to shipping a copy of Utility.pm from Spreadsheet::ParseExcel that

Bug#1072036: release.debian.org: Transition for gsl-2.8 / libgsl28

2024-05-27 Thread Dirk Eddelbuettel
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition GNU GSL 2.8 was released a few days ago, and I uploaded a new version to experimental was has now cleared NEW. I checked my email folder, and the last time this happened (gsl 2.7, earl

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
We are still having the open issue of rpy2 now segfaulting on the embedding tests which reproduces on my plain vanilla amd64 setup -- so I commented that test out too. Laurent: Any idea why R 4.4.0 and rpy2 do not get along on embedding? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel |

Bug#1071940: r-cran-matrix: why depend on r-base instead of r-base-core?

2024-05-26 Thread Dirk Eddelbuettel
On 26 May 2024 at 11:41, Jörg-Volker Peetz wrote: | Package: r-cran-matrix | Version: 1.7-0-2 | Severity: wishlist | | Dear Dirk Eddelbuettel, | | shouldn't this package depend on r-base-core instead of r-base? | The description of r-base says it "eases the transition from the |

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
On 25 May 2024 at 12:35, Bo YU wrote: | Hi, | On Sat, May 18, 2024 at 06:41:53AM -0500, Dirk Eddelbuettel wrote: | > | >On 17 May 2024 at 23:05, Santiago Vila wrote: | >| Dirk Eddelbuettel wrote: | >| > Is there a chance this could be spurious? | >| | >| Unlikely because

Bug#1071535: car: Please remove r-cran-maptools from (Build-)Depends

2024-05-20 Thread Dirk Eddelbuettel
On 20 May 2024 at 19:12, Andreas Tille wrote: | Source: car | Version: 3.1-2-2 | Severity: normal | | Hi, | | car mentions r-cran-maptools in (Build-)Depends which is not backed up | by the DESCRIPTION file. Since maptools is removed from CRAN I'd like Yes, we fail to build if 'added' depends

Bug#1071362: rpy2 segfaults in tests under Debian bulk rebuild

2024-05-18 Thread Dirk Eddelbuettel
On 18 May 2024 at 07:59, Dirk Eddelbuettel wrote: | | Hi Laurent, | | We a build issue in Debian found via bulk rebuilds. Which everything current | in 'unstable', rpy2 (version 3.5.16) segfaults in a test when embedding. | | Details are at https://bugs.debian.org/1071362 | | If yo

Bug#1071380: RM: r-cran-randomfields -- ROM; Package removed from CRAN

2024-05-18 Thread Dirk Eddelbuettel
Appears to be a duplicate of 1071379, maybe check if your script meant to remove another one. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-18 Thread Dirk Eddelbuettel
On 17 May 2024 at 23:05, Santiago Vila wrote: | Dirk Eddelbuettel wrote: | > Is there a chance this could be spurious? | | Unlikely because it also happens here: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rpy2.html Ok, I will get in touch with Laurent. D

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-17 Thread Dirk Eddelbuettel
Is there a chance this could be spurious? The R API is reasonably stable, including the part for embedding R (and I am upstream for a small project doing that from C++). rpy2 is also mature and stable. So could this be a one-off? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.o

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 06:28, Dirk Eddelbuettel wrote: | | On 10 May 2024 at 10:54, Graham Inggs wrote: | | Source: r-cran-ff | | Version: 4.0.12+ds-1 | | Severity: serious | | X-Debbugs-Cc: Dirk Eddelbuettel | | User: debian...@lists.debian.org | | Usertags: regression | | | | Hi Maintainer

Bug#1070842: r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:01, Graham Inggs wrote: | Source: r-bioc-mutationalpatterns | Version: 3.12.0+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-mutationalpatterns' autopkgtest regresses

Bug#1070843: r-bioc-s4vectors: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:04, Graham Inggs wrote: | Source: r-bioc-s4vectors | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-s4vectors' autopkgtest regresses when tested w

Bug#1070841: r-bioc-iranges: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:58, Graham Inggs wrote: | Source: r-bioc-iranges | Version: 2.36.0-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-iranges' autopkgtest regresses when tested with r-base

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:54, Graham Inggs wrote: | Source: r-cran-ff | Version: 4.0.12+ds-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-ff's autopkgtest regresses when tested with r-base 4.4

Bug#1070240: r-cran-tmb: Please rebuild under updated Matrix package

2024-05-02 Thread Dirk Eddelbuettel
Package: r-cran-tmb Version: 1.9.11-1 Severity: important CRAN package Matrix had a new release 1.7.0 bringing in a new SuiteSparse API which requires a rebuild if (and only if) the Matrix headers are used. Your package is one of those that do, and therefore needs a rebuild. This was reasonably

Bug#1070239: r-cran-openmx: Please rebuild under updated Matrix package

2024-05-02 Thread Dirk Eddelbuettel
Package: r-cran-openmx Version: 2.21.11+dfsg-3 Severity: important CRAN package Matrix had a new release 1.7.0 bringing in a new SuiteSparse API which requires a rebuild if (and only if) the Matrix headers are used. Your package is one of those that do, and therefore needs a rebuild. This was r

Bug#1070238: r-cran-irlba: Please rebuild under updated Matrix package

2024-05-02 Thread Dirk Eddelbuettel
Package: r-cran-irlba Version: 2.3.5.1-3 Severity: important CRAN package Matrix had a new release 1.7.0 bringing in a new SuiteSparse API which requires a rebuild if (and only if) the Matrix headers are used. Your package is one of those that do, and therefore needs a rebuild. This was reasona

Bug#1070009: r-cran-data.table: Update to current upstream

2024-04-30 Thread Dirk Eddelbuettel
The file 'issue_563_fread.txt' appears to be an input to data.table::fread() for a test on encodings, glancing at the context. I can run 'R CMD check --as-cran data.table_1.15.4.tar.gz' just fine [1] here without any failing tests (and I have no locale or anything set). It's not my package but i

Bug#1070009: r-cran-data.table: Update to current upstream

2024-04-30 Thread Dirk Eddelbuettel
The package is pristine at CRAN https://cran.r-project.org/web/checks/check_results_data.table.html (apart from some new warnings several packages now get about interal R API headers, nothing to do with tests) Maybe you can sort this with upstream -- data.table is effectively holding up r-base

Bug#1070009: r-cran-data.table: Update to current upstream

2024-04-28 Thread Dirk Eddelbuettel
Package: r-cran-data.table Version: 1.14.10+dfsg-1 Severity: normal data.table had a release 1.15.0 in January -- the first new one in three years! -- and two follow-ups since bringing it 1.15.4 at CRAN. Please update the Debian package to the current upstream version. This should likely reduc

Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory

2024-04-25 Thread Dirk Eddelbuettel
reassign 1069842 r-base thanks On 25 April 2024 at 18:27, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: Thanks for this. It is caused by the j

Bug#970021: Seeking a small group to package Apache Arrow (was: Bug#970021: RFP: apache-arrow -- cross-language development platform for in-memory analytics)

2024-04-09 Thread Dirk Eddelbuettel
On 9 April 2024 at 18:45, Jose Manuel Abuin Mosquera wrote: | If possible, I would like to contribute. At work we use the Go and | Python implementations, also, in the short term, we will start using the | Rust one. Similar for us, and we have seen plenty of build headaches across pypi or cond

Bug#1068117: dieharder: dab_monobit2 crashes with ntuple > 17

2024-04-08 Thread Dirk Eddelbuettel
On 8 April 2024 at 18:21, Lucas Thode wrote: | Apologies for the confusion, I didn't realize the patch in question was a new | addition.  Just confirmed that it errors out instead of segfaulting or hanging. Thanks for confirming! Dirk | On Sat, Apr 6, 2024 at 5:32 PM Dirk Eddelbu

Bug#1068117: dieharder: dab_monobit2 crashes with ntuple > 17

2024-04-06 Thread Dirk Eddelbuettel
Hi Lucas, As Milan suggested, please sure you are current. If in doubt, park you current checkout and start from git checkout https://github.com/eddelbuettel/dieharder.git where you should see today's commit from merging PR 24. edd@rob:~/git/dieharder(master)$ git ls | head * 3

Bug#1068117: dieharder: dab_monobit2 crashes with ntuple > 17

2024-04-05 Thread Dirk Eddelbuettel
Hi Lucas, On 30 March 2024 at 22:47, Lucas Thode wrote: | Package: dieharder | Version: 3.31.1.4-1.1 | Severity: normal | X-Debbugs-Cc: thode...@gmail.com | | Dear Maintainer, | | `dieharder -d 209 -n $nvalue` crashes for $nvalue>17: | | $ dieharder -d 209 | #

Bug#970021: Seeking a small group to package Apache Arrow (was: Bug#970021: RFP: apache-arrow -- cross-language development platform for in-memory analytics)

2024-03-31 Thread Dirk Eddelbuettel
Julian, Arrow is a complicated and large package. We use it at work (where there is a fair amount of Python, also to Conda etc) and do have issues with more complex builds especially because it is 'data infrastructure' and can come in from different parts. I would recommend against packaging at

Bug#1067218: gretl: please make the build reproducible

2024-03-20 Thread Dirk Eddelbuettel
Hi Chris, On 20 March 2024 at 11:05, Chris Lamb wrote: | Source: gretl | Version: 2023c-2.1 | Severity: wishlist | Tags: patch | User: reproducible-bui...@lists.alioth.debian.org | Usertags: timestamps | X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org | | Hi, | | Whilst working on the

Bug#1066403: R packages failing to build with missing -ltirpc are actually an issue in r-base

2024-03-13 Thread Dirk Eddelbuettel
-Depends to fix build issue from side effects of t64 transition (Closes: #1065216) -- Dirk Eddelbuettel Mon, 04 Mar 2024 08:54:45 -0600 I will take care of it in -3. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1065216: r-base: recent libc6-dev change causes the xdr feature to be dropped

2024-03-04 Thread Dirk Eddelbuettel
On 1 March 2024 at 23:36, Aurelien Jarno wrote: | Source: r-base | Version: 4.3.3-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | User: debian-gl...@lists.debian.org | Usertags: libtirpc-dev | | Dear maintainer, | | Starting

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 29 February 2024 at 00:20, Steve Langasek wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accidental b

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