Bug#868558: All affected packages are manually uloaded

2017-09-09 Thread Dirk Eddelbuettel
On 9 September 2017 at 15:38, Andreas Tille wrote: | I hereby closing this bug since all affected packages were | manually uploaded. I really, really appreciate that. In your view, can we / shall we also close the underlying https://bugs.debian.org/861333 which started this? As I underst

Bug#868558: nmu: multiple r-* packages

2017-09-09 Thread Dirk Eddelbuettel
On 9 September 2017 at 14:12, Sébastien Villemot wrote: | On Sat, Sep 09, 2017 at 06:48:12AM -0500, Dirk Eddelbuettel wrote: | > | > On 9 September 2017 at 06:44, Niels Thykier wrote: | > | Thanks to Sébastien and Andreas for explaining the issue. | > | > Well, was it "exp

Bug#868558: nmu: multiple r-* packages

2017-09-09 Thread Dirk Eddelbuettel
On 9 September 2017 at 06:44, Niels Thykier wrote: | Thanks to Sébastien and Andreas for explaining the issue. Well, was it "explained" ? They both raised and stressed a hypothetical issue: That "there might be siutations where a partial upgrade breaks" We don't actually know whether this holds

Bug#874730: piuparts-reports needs to be ported to python3 as python-rpy2 is gone (or another graphing solution is needed)

2017-09-09 Thread Dirk Eddelbuettel
On 9 September 2017 at 10:50, Holger Levsen wrote: | package: piuparts-master | version: 0.81 | severity: important | x-debbugs-cc: e...@debian.org | | On Sat, Sep 09, 2017 at 09:54:33AM +0200, Andreas Beckmann wrote: | > rpy2 (2.9.0-1) unstable; urgency=medium | > . | >* New upstream relea

Bug#868558: nmu: multiple r-* packages

2017-09-08 Thread Dirk Eddelbuettel
On 9 September 2017 at 01:31, Andreas Beckmann wrote: | On 2017-09-08 22:49, Dirk Eddelbuettel wrote: | > I still maintain that this is a useless "academic" consideration. If users | > want to corrupt their systems by only upgrading one package I will not stop | > them. They

Bug#861333: Why does r-cran-rcppgsl not migrate to testing?

2017-09-08 Thread Dirk Eddelbuettel
On 8 September 2017 at 22:47, Andreas Tille wrote: | Hi Dirk, | | On Thu, Sep 07, 2017 at 02:46:04PM -0500, Dirk Eddelbuettel wrote: | > | > On 7 September 2017 at 21:20, Andreas Tille wrote: | > | Hi Dirk, | > | | > | On Wed, Sep 06, 2017 at 04:22:33PM -0500, Dirk Edd

Bug#868558: nmu: multiple r-* packages

2017-09-08 Thread Dirk Eddelbuettel
On 8 September 2017 at 20:01, Sébastien Villemot wrote: | Hi Dirk and others, | | On Fri, Sep 08, 2017 at 12:29:25PM -0500, Dirk Eddelbuettel wrote: | | > | The problem is that you can end up with r-bioc-makecdfenv_1.50.0-1 (i.e. before | > | the rebuild) and r-base_3.4.1-2, because n

Bug#868558: nmu: multiple r-* packages

2017-09-08 Thread Dirk Eddelbuettel
On 8 September 2017 at 17:23, Emilio Pozuelo Monfort wrote: | On 01/09/17 14:28, Dirk Eddelbuettel wrote: | > | > On 1 September 2017 at 13:52, Emilio Pozuelo Monfort wrote: | > | On 01/09/17 13:25, Dirk Eddelbuettel wrote: | > | > | > | > Emilio, | > | > | > | &

Bug#861333: Why does r-cran-rcppgsl not migrate to testing?

2017-09-07 Thread Dirk Eddelbuettel
Hi Andreas, On 7 September 2017 at 21:20, Andreas Tille wrote: | Hi Dirk, | | On Wed, Sep 06, 2017 at 04:22:33PM -0500, Dirk Eddelbuettel wrote: | > On 6 September 2017 at 22:48, Andreas Tille wrote: | > | [Chris, I took the freedom to move r-cran-mcmc to Debian Science | > | team si

Bug#874079: ITP: r-cran-readstata13 -- Functions to read and write 'Stata' files

2017-09-02 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-readstata13 Version : 0.9.0-1 Upstream Author : Jan Marvin Garbuszus, Sebastian Jeworutzki * URL or Web page : https://github.com/sjewo/readstata13 * License : GPL-2 Description : R

Bug#868558: nmu: multiple r-* packages

2017-09-02 Thread Dirk Eddelbuettel
On 2 September 2017 at 19:23, Steve Cotton wrote: | If I may ask, "why do you want to spend the developer time to rebuild only 46 | packages, when there's already an infrastructure that does it for you, at the | cost of rebuilding all 516"? Because in my 20+ years with Debian, we generally opted

Bug#868558: nmu: multiple r-* packages

2017-09-02 Thread Dirk Eddelbuettel
On 2 September 2017 at 14:57, Steve Cotton wrote: | On Thu, Aug 10, 2017 at 12:03:06PM -0500, Dirk Eddelbuettel wrote: | > But the whole point of my bug report, and write up, is that | > | >46 | > | > out of 516 package need a rebuild. | > | > So I continue to arg

Bug#868558: nmu: multiple r-* packages

2017-09-01 Thread Dirk Eddelbuettel
On 1 September 2017 at 13:52, Emilio Pozuelo Monfort wrote: | On 01/09/17 13:25, Dirk Eddelbuettel wrote: | > | > Emilio, | > | > Thanks for your follow-up. I will try to get to each point. | > | > On 1 September 2017 at 11:42, Emilio Pozuelo Monfort wrote: | > | What N

Bug#868558: nmu: multiple r-* packages

2017-09-01 Thread Dirk Eddelbuettel
Emilio, Thanks for your follow-up. I will try to get to each point. On 1 September 2017 at 11:42, Emilio Pozuelo Monfort wrote: | What Niels meant is whether having an old, non-rebuilt R module with the new | r-base works, Yes, in general, and here in this case. | and whether having a new, r

Bug#868558: nmu: multiple r-* packages

2017-08-26 Thread Dirk Eddelbuettel
So I tried that -- and I cannot currently tickle the bug: -- r-cran-spatial (from the initial bug report) was long rebuilt by me -- r-cran-logspline (which you mentioned) is actually no longer on my refined (shorter) list, no issues there -- r-cran-data.table (on my list) is a false pos

Bug#868558: nmu: multiple r-* packages

2017-08-26 Thread Dirk Eddelbuettel
Hi Niels et al, On 26 August 2017 at 07:22, Niels Thykier wrote: | Dirk Eddelbuettel: | > [...] | > On 19 August 2017 at 13:14, Dirk Eddelbuettel wrote: | > | | > | Dear release team, | > | | | Hi, | | Sorry for the slow up take on our part. No worries. Releases and Debconfs

Bug#868558: nmu: multiple r-* packages

2017-08-25 Thread Dirk Eddelbuettel
severity 868558 serious quit On 19 August 2017 at 13:14, Dirk Eddelbuettel wrote: | | Dear release team, | | Gentle poke. We still need this set of NMUs to get R 3.4.1 into testing. | | "Ask me anything" -- What (if anything) is missing? How can I help? Setting severity to '

Bug#868558: nmu: multiple r-* packages

2017-08-19 Thread Dirk Eddelbuettel
Dear release team, Gentle poke. We still need this set of NMUs to get R 3.4.1 into testing. "Ask me anything" -- What (if anything) is missing? How can I help? Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#868558: nmu: multiple r-* packages

2017-08-10 Thread Dirk Eddelbuettel
Hi Andreas, On 10 August 2017 at 15:36, Andreas Beckmann wrote: | On Sun, 6 Aug 2017 08:15:17 -0500 Dirk Eddelbuettel wrote: | > Let's get these 46 packages rebuilt so that r-base 3.4.1 can migrate to | > testing. | | Disclaimer: I don't know anything about R or the R packag

Bug#871269: missing Replaces

2017-08-10 Thread Dirk Eddelbuettel
On 9 August 2017 at 19:43, Andreas Beckmann wrote: | On 2017-08-09 19:09, Andreas Beckmann wrote: | > I can't find a *gsl*prof* package in the archive, so this indeed seems | > to be a new one. And should be totally unrelated to the splitting of the | > library package. | | That's an interesting

Bug#871269: missing Replaces

2017-08-09 Thread Dirk Eddelbuettel
On 9 August 2017 at 19:09, Andreas Beckmann wrote: | On 2017-08-09 18:52, Dirk Eddelbuettel wrote: | > Uploaded a -6 with the versioned Replaces but just got a note it is in NEW | > because of libgsl-prof -- which seems strange. Any idea? | | Since the packaging is not in git (or anoth

Bug#871269: missing Replaces

2017-08-09 Thread Dirk Eddelbuettel
On 9 August 2017 at 16:55, Andreas Beckmann wrote: | On 2017-08-09 16:49, Dirk Eddelbuettel wrote: | > | All the Conflicts can probably be turned into Breaks (which will make apt's life | > | easier for distupgrades involving this transition) and Breaks and Replaces | > | need to m

Bug#871269: missing Replaces

2017-08-09 Thread Dirk Eddelbuettel
Hi Andreas, Thanks for the note. On 9 August 2017 at 15:58, Andreas Beckmann wrote: | Followup-For: Bug #871269 | | Hi Dirk, | | for libgslcblas0 the Replaces on libgsl23 needs to be versioned (<< 2.4+dfsg-4). Oh, right. | All the Conflicts can probably be turned into Breaks (which will m

Bug#871269: missing Replaces

2017-08-08 Thread Dirk Eddelbuettel
(Crap. This sat unsent in Emacs. Anyway -- fixed now, and thanks!) On 7 August 2017 at 10:11, Matthias Klose wrote: | Package: src:gsl | Version: 2.4+dfsg-4 | Severity: serious | Tags: sid buster | | Unpacking libgslcblas0:amd64 (2.4+dfsg-4) ... | dpkg: error processing archive | /tmp/apt-dpkg-

Bug#870772: libgsl misses some breaks/replaces

2017-08-07 Thread Dirk Eddelbuettel
On 7 August 2017 at 09:00, Antonio Ospite wrote: | On Mon, 7 Aug 2017 13:37:39 +1200 Ben Caradoc-Davies | wrote: | > Is there something wrong with libgsl23 2.4+dfsg-4? nco which depends on | > libgsl23 and {inkscape, qgis} which depend on libgsl2 are not | > coinstallable. Should libgsl23 have

Bug#870772: libgsl misses some breaks/replaces

2017-08-07 Thread Dirk Eddelbuettel
On 7 August 2017 at 13:37, Ben Caradoc-Davies wrote: | Is there something wrong with libgsl23 2.4+dfsg-4? nco which depends on | libgsl23 and {inkscape, qgis} which depend on libgsl2 are not | coinstallable. Should libgsl23 have libgsl2 in its "Replaces:"? I do not | understand, but I suspect t

Bug#868558: nmu: multiple r-* packages

2017-08-06 Thread Dirk Eddelbuettel
Dear release team, I have a follow-up. Kurt Hornik (CC'ed as a courtesy) of the R Core team, and also an avid Debian user, pointed out another suitable test (of checking whether the (optional) C-level registration had actually been done in package). With that, the set of packages to NMU halfes

Bug#870772: libgsl misses some breaks/replaces

2017-08-05 Thread Dirk Eddelbuettel
On 5 August 2017 at 06:49, Dirk Eddelbuettel wrote: | On 5 August 2017 at 12:35, Guillem Jover wrote: | | Strictly speaking, libgslcblas does have a SONAME: | | | | $ objdump -p /usr/lib/x86_64-linux-gnu/libgslcblas.so.0 | grep SONAME | | SONAME libgslcblas.so.0

Bug#870772: libgsl misses some breaks/replaces

2017-08-05 Thread Dirk Eddelbuettel
On 5 August 2017 at 12:35, Guillem Jover wrote: | Hi! | | On Fri, 2017-08-04 at 23:10:49 -0500, Dirk Eddelbuettel wrote: | > On 5 August 2017 at 00:04, Alf Gaida wrote: | > | like the subject says libgsl lacks some breaks and replaces, that breaks the upgrade path: | | > | The followi

Bug#870772: libgsl misses some breaks/replaces

2017-08-04 Thread Dirk Eddelbuettel
On 5 August 2017 at 00:04, Alf Gaida wrote: | Package: libgsl23 | Version: 2.4+dfsg-3 | Severity: grave | Tags: patch | | Dear Maintainer, | | like the subject says libgsl lacks some breaks and replaces, that breaks the upgrade path: | | % LANG=C sudo apt -f install

Bug#870139: dieharder: dab_monobit2 broken?

2017-07-30 Thread Dirk Eddelbuettel
On 30 July 2017 at 12:44, Kurt Roeckx wrote: | Package: dieharder | Version: 3.31.1-7 | | Hi, | | When running a test with: dieharder -a -g 200 -k 2 -Y 2 -P 1000 | | I got: | diehard_sums| 0| 100| 100|0.03955711| PASSED | diehard_sums| 0| 100| 200|0.0432

Bug#868558: nmu: multiple r-* packages

2017-07-29 Thread Dirk Eddelbuettel
Dear release team, On 16 July 2017 at 10:40, Dirk Eddelbuettel wrote: | | Package: release.debian.org | User: release.debian@packages.debian.org | Usertags: binnmu | Severity: normal | | R 3.4.0, which was released in April, made one subtle breaking change | affecting how (optional

Bug#869778: Re: Bug#869778: libgsl2: soname change breaks dependencies

2017-07-26 Thread Dirk Eddelbuettel
On 26 July 2017 at 15:36, James Cowgill wrote: | Hi, | | On 26/07/17 15:10, Dirk Eddelbuettel wrote: | > On 26 July 2017 at 14:48, James Cowgill wrote: | > | On 26/07/17 14:39, Dirk Eddelbuettel wrote: | > | > On 26 July 2017 at 15:18, Julien Cristau wrote: | > | > |

Bug#869778: Re: Bug#869778: libgsl2: soname change breaks dependencies

2017-07-26 Thread Dirk Eddelbuettel
On 26 July 2017 at 14:48, James Cowgill wrote: | Hi, | | On 26/07/17 14:39, Dirk Eddelbuettel wrote: | > On 26 July 2017 at 15:18, Julien Cristau wrote: | > | Control: reopen -1 | > | | > | On Wed, Jul 26, 2017 at 12:57:55 +0100, James Cowgill wrote: | > | | > | > Hi, | &g

Bug#869778: Re: Bug#869778: libgsl2: soname change breaks dependencies

2017-07-26 Thread Dirk Eddelbuettel
On 26 July 2017 at 15:18, Julien Cristau wrote: | Control: reopen -1 | | On Wed, Jul 26, 2017 at 12:57:55 +0100, James Cowgill wrote: | | > Hi, | > | > On 26/07/17 12:32, Dirk Eddelbuettel wrote: | > > On 26 July 2017 at 13:14, Michal Politowski wrote: | > > | Package: li

Bug#869778: Re: Bug#869778: libgsl2: soname change breaks dependencies

2017-07-26 Thread Dirk Eddelbuettel
On 26 July 2017 at 12:57, James Cowgill wrote: | Hi, | | On 26/07/17 12:32, Dirk Eddelbuettel wrote: | > On 26 July 2017 at 13:14, Michal Politowski wrote: | > | Package: libgsl2 | > | Version: 2.4+dfsg-1 | > | Severity: important | > | | > | libgsl2 2.3+dfsg-1 contains /usr/

Bug#869778: libgsl2: soname change breaks dependencies

2017-07-26 Thread Dirk Eddelbuettel
On 26 July 2017 at 13:14, Michal Politowski wrote: | Package: libgsl2 | Version: 2.4+dfsg-1 | Severity: important | | libgsl2 2.3+dfsg-1 contains /usr/lib/i386-linux-gnu/libgsl.so.19 (on i386) | libgsl2 2.4+dfsg-1 contains /usr/lib/i386-linux-gnu/libgsl.so.23 | this breaks packages depending on l

Bug#869695: libgsl2: asymtote, enblend depend on libgsl.so.19, but libgsl.so.23 in latest version

2017-07-25 Thread Dirk Eddelbuettel
reassign 869695 asymptote thanks To me, that is a bug in asymptote. GSL went to version 2.* quite some time ago, and by now everybody has had time to update. The API is not that different, really. Please rebuild (and patch if needed) aymptote against the current GSL version. Dirk On 26 July

Bug#865692: Suggested patch

2017-07-21 Thread Dirk Eddelbuettel
On 21 July 2017 at 07:08, Andreas Tille wrote: | I stumbled upon this since the Debian Med package tree-puzzle | is affected. Wouldn't the patch as easy as | | cd $somewhere && $(MAKE) && cd .. I went with $(MAKE) -C somewhereas suggested in the original report. Dirk -- http://dirk

Bug#865692: Suggested patch

2017-07-21 Thread Dirk Eddelbuettel
On 21 July 2017 at 07:08, Andreas Tille wrote: | Hi Dirk, | | I stumbled upon this since the Debian Med package tree-puzzle | is affected. Wouldn't the patch as easy as | | cd $somewhere && $(MAKE) && cd .. Sure. The bigger problem is that SPRNG is really outdated, as is the package itsel

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-07-18 Thread Dirk Eddelbuettel
On 18 July 2017 at 11:55, Johannes Ranke wrote: | Nice. Amazing work. So buster should be covered then. Thanks! I also pushed the code to CRAN as RcppAPT 0.0.4 just to mark a snapshot. | Now (correct me if I am wrong) if we could adapt your scripts to create | versioned Breaks: relationships

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-07-16 Thread Dirk Eddelbuettel
Just a quick follow-up to say that I finally had some time to go over this again (twice, in fact) and to also include BioC and 'other' packages. A full write-up in the (GitHub) sources of package RcppAPT and also available as a rendered vignette at http://eddelbuettel.github.io/rcppapt/binnmu

Bug#868558: nmu: multiple r-* packages

2017-07-16 Thread Dirk Eddelbuettel
Package: release.debian.org User: release.debian@packages.debian.org Usertags: binnmu Severity: normal R 3.4.0, which was released in April, made one subtle breaking change affecting how (optional) compiled code in contributed package is loaded, affecting the older two of the three (plus one

Bug#868033: xts 0.10-0

2017-07-12 Thread Dirk Eddelbuettel
I will prepare an NMU for the delayed-5 queue -- the package is now needed for something I have in the NEW queue which itself is needed for an existing package. So this has become a build dependency issue. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#868033: r-cran-xts: xts 0.10-0 is out

2017-07-11 Thread Dirk Eddelbuettel
Package: r-cran-xts Version: 0.9-7-1 Severity: normal The xts package, while being widely used, had not had an upstream update in several years. But now it has, and versioned Depends: start to appear. Hence it would be nice if the package could be updated to 0.10-0. As a fallback, I could do s

Bug#866768: r-base: R does not set the default user directory.

2017-07-07 Thread Dirk Eddelbuettel
On Thu, Jul 06, 2017 at 03:37:10PM -0400, Russell Almond wrote: > Let me add a resounding ME TOO. This is a bug and I want it fixed. I essentially stopped reading your mail here. That tone gets you nowhere. Dirk -- Three out of two people have difficulties with fractions.

Bug#866768: r-base: R does not set the default user directory.

2017-07-06 Thread Dirk Eddelbuettel
Just set R_LIBS_USER below /etc, for example by removing _one_ char from /etc/R/Renviron or by setting it in /etc/environment or any other mean. A more constructive discussion is happening over on r-sig-debian. Dirk -- Three out of two people have difficulties with fractions.

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-06-25 Thread Dirk Eddelbuettel
Hi Charles, On 1 May 2017 at 14:53, Charles Plessy wrote: | Le Sat, Apr 29, 2017 at 09:50:01AM -0500, Dirk Eddelbuettel a écrit : | > | > I think I will cover these by hand now: | > | >package dotFortran dotC recommended | > 1: class-7.3-14 FALSE T

Bug#865761: ITP: r-cran-ttr -- GNU R package to construct technical trading rules

2017-06-24 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-ttr Version : 0.23-1 Upstream Author : Joshua Ulrich * URL or Web page : https://github.com/joshuaulrich/TTR * License : GPL-2 Description : GNU R package to construct technical

Bug#865692: sprng hides build failures

2017-06-23 Thread Dirk Eddelbuettel
On 23 June 2017 at 22:37, Helmut Grohne wrote: | Source: sprng | Version: 2.0a-2 | Severity: serious | Justification: policy 4.6 | User: helm...@debian.org | Usertags: rebootstrap | | sprng's build system hides build failures. It's Makefile uses | constructs such as: | | (cd $somewhere; $(MA

Bug#862112: #862112: r-base-dev: Generate reproducible output independently of the build path

2017-05-15 Thread Dirk Eddelbuettel
Sorry, was out traveling / running a relay. Now back. On 15 May 2017 at 17:12, Ximin Luo wrote: | Holger Levsen: | > control: found -1 3.4.0-1 | > control: notfound -1 3.4.0-1.0~reproducible2 | > | > Hi Dirk, | > | > I've asked Ximin to file this bug so that we have something to track and to |

Bug#858488: dieharder segfaults when testing the XOR generator

2017-05-13 Thread Dirk Eddelbuettel
On 13 May 2017 at 17:24, Bernhard Übelacker wrote: | Hello, | just tried to reproduce the crash I came to following stack: | | | gdb -q --args dieharder -g 207 -a | | Program received signal SIGSEGV, Segmentation fault. | gsl_rng_get (r=0x0) at ../gsl/gsl_rng.h:161 | 161 return (r->type->

Bug#862283: r-base: 'R CMD Sweave' exit status is always 1

2017-05-10 Thread Dirk Eddelbuettel
On 10 May 2017 at 17:08, Graham Inggs wrote: | Source: r-base | Version: 3.4.0-1 | Affects: src:r-cran-gsl src:r-cran-shinyjs src:r-cran-v8 | | Hi Maintainer | | With R 3.4.0-1, Sweave's exit status seems to be always 1, even when no | apparent error occurred. | | e.g. | | $ R CMD Sweave vign

Bug#862259: libgsl-dev is not Multi-Arch compatible

2017-05-10 Thread Dirk Eddelbuettel
On 10 May 2017 at 13:17, Francois Gouget wrote: | Package: libgsl-dev | Version: 2.3+dfsg-1 | Severity: normal | | Dear Maintainer, | | The amd64 version conflicts with the i386 one which makes it impossible | to install both. As a result one is forced to chose between developing | 32 bit or 64

Bug#862039: r-bioc-gviz: accesses the internet during build

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 14:57, Andreas Tille wrote: | Hi Chris, | | On Sun, May 07, 2017 at 06:06:10PM +0100, Chris Lamb wrote: | > | > Whilst r-bioc-gviz builds successfully on unstable/amd64, according to | > Debian Policy 4.9 packages may not attempt network access during | > a build. | > | >00

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 15:00, Rene Engelhard wrote: | tag 862132 + patch | thanks | | Hi, | | On Tue, May 09, 2017 at 07:39:28AM -0500, Dirk Eddelbuettel wrote: | > | > b) when I add it as in | > | > | > | > PKG_CHECK_MODULES([CPPUNIT], [cppunit >= 1.12.1]) | > |

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-09 Thread Dirk Eddelbuettel
On 9 May 2017 at 07:17, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 06:17:19PM -0500, Dirk Eddelbuettel wrote: | > a) your line was missing the square brackets | | Works without. Not for me. | > b) when I add it as in | > | > PKG_CHECK_MODULES([CPPUNI

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
Sigh. Not my day today. Somehow a) your line was missing the square brackets b) when I add it as in PKG_CHECK_MODULES([CPPUNIT], [cppunit >= 1.12.1]) it doesn't somehow make it into configure so built still fails c) the whole bug report was a little annoying as _we don't even have

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 9 May 2017 at 00:06, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:51:52PM -0500, Dirk Eddelbuettel wrote: | > On 8 May 2017 at 23:41, Rene Engelhard wrote: | > | Hi, | > | | > | On Mon, May 08, 2017 at 04:34:27PM -0500, Dirk Eddelbuettel wrote: | > | > No

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 23:41, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:34:27PM -0500, Dirk Eddelbuettel wrote: | > Not when you talk to upstream, as I do as maintainer. Upstream's code may | > well be built against cppunit-config for years to come. | | Why? | | The po

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 23:19, Rene Engelhard wrote: | Hi, | | On Mon, May 08, 2017 at 04:12:19PM -0500, Dirk Eddelbuettel wrote: | > Ans when you say "you" I presume you are talking to upstream (who happens to | > be a friend of mine, and CC'ed) ? | > | > Are you su

Bug#862132: src:jags: FTBFS with cppunit 0.14 (cppunit-config removed, errors ignored)

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 22:26, Rene Engelhard wrote: | Package: src:jags | Version: 4.2.0-2 | Severity: normal | | Dear Maintainer, | | [ cppunit 0.14 is not in Debian yet, see #861718. Thus normal for now ] | | On a rebuild test using ratt I noticed your package doesn't build with | cppunit 0.14: |

Bug#862112: r-base-dev: Generate reproducible output independently of the build path

2017-05-08 Thread Dirk Eddelbuettel
On 8 May 2017 at 19:06, Ximin Luo wrote: | Package: r-base-dev | Version: 3.4.0-1.0~reproducible2 | Severity: wishlist | Tags: upstream patch | User: reproducible-bui...@lists.alioth.debian.org | Usertags: build-path | | Dear Maintainer, | | I've been asked to file this bug report so that others

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-06 Thread Dirk Eddelbuettel
On 6 May 2017 at 22:34, Tomasz Buchert wrote: | Hey, | | On 06/05/17 14:43, Dirk Eddelbuettel wrote: | > | > On 6 May 2017 at 20:43, Tomasz Buchert wrote: | > | On 06/05/17 19:23, Tomasz Buchert wrote: | > | > [...] | > | | > | Ok, I confirm that dlopen() is required to

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-06 Thread Dirk Eddelbuettel
On 6 May 2017 at 20:43, Tomasz Buchert wrote: | On 06/05/17 19:23, Tomasz Buchert wrote: | > [...] | | Ok, I confirm that dlopen() is required to properly resolve some | symbols later: I can only assume that openmpi does some magic | there. Here are 2 solutions I came up with: | | 1. Just like

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-06 Thread Dirk Eddelbuettel
Hi Tomasz, On 6 May 2017 at 18:46, Tomasz Buchert wrote: | On 03/05/17 17:54, Ralf Stubner wrote: | > [...] | | Hi all, | this is really another iteration of #741297. | | | Honestly, I believe that the whole test of openmpi "existence" using | dlopen is unnecessary. This code is only executed

Bug#861636: FTBFS when sources imported into git

2017-05-03 Thread Dirk Eddelbuettel
On 3 May 2017 at 19:33, Daniel Baumann wrote: | On 05/03/17 16:19, Dirk Eddelbuettel wrote: | > But there isn't a lot I can do | | well, you could create the directory in the clean target.. and keep | track of that by using find -type d -empty or so.. Patch? | (yes, rather

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-03 Thread Dirk Eddelbuettel
On 3 May 2017 at 09:36, Dirk Eddelbuettel wrote: | | This may have something to do with it: | | root@ef11adb9da1c:/# pkg-config --libs ompi | -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr//lib -lmpi | root@ef11adb9da1c:/# | | This is what we use at build-time. Yet: | | root

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-03 Thread Dirk Eddelbuettel
This may have something to do with it: root@ef11adb9da1c:/# pkg-config --libs ompi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr//lib -lmpi root@ef11adb9da1c:/# This is what we use at build-time. Yet: root@ef11adb9da1c:/# ls -l /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.* lrwxrwxr

Bug#861748: r-cran-rmpi: Loading library fails

2017-05-03 Thread Dirk Eddelbuettel
On 3 May 2017 at 15:11, Ralf Stubner wrote: | Package: r-cran-rmpi | Version: 0.6-6-3 | Severity: grave | Justification: renders package unusable | | Dear Maintainer, | | When I try to load the Rmpi library, it fails with an error about a missing | shared object file: | | $ LANG=C Rscript -e "l

Bug#861636: FTBFS when sources imported into git

2017-05-03 Thread Dirk Eddelbuettel
On 2 May 2017 at 06:26, Daniel Baumann wrote: | Package: r-base | Version: 3.4.0-1 | Severity: minor | | Hi, | | the upstream tarball of r-base contains an empty directory: | | tests/Pkgs/exNSS4/man | | when importing r-base into git, this gets lost (because git cannot track | empty director

Bug#861479: quantlib-swig: Missing call to dh_md5sums causes a dbgsym package without a md5sums file

2017-04-29 Thread Dirk Eddelbuettel
On 29 April 2017 at 16:29, Niels Thykier wrote: | Source: quantlib-swig | Version: 1.9-1 | Severity: important | User: debhelper-de...@lists.alioth.debian.org | Usertags: dbgsyms-package-with-issues | | Hi, | | Due to dh_md5sums being commented out in d/rules, the generated dbgsym | package for

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-04-29 Thread Dirk Eddelbuettel
Here is a follow-up, and for kicks with some R scripting. It requires sources to have directory names like 'class-7.3-14', ie (CRAN) package name followed by (CRAN) version. Shell script: - #!/bin/bash newfunc() {

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-04-27 Thread Dirk Eddelbuettel
On 28 April 2017 at 00:31, Johannes Ranke wrote: | > | Packages compiled locally can simply be rebuilt using | > | | > | update.packages(lib.loc="/usr/local/lib/R/site-library", | > | checkBuilt=TRUE) | > | | > | However the packages provided by Debian packages are installed in a | > | direc

Bug#861333: API transition of R packages

2017-04-27 Thread Dirk Eddelbuettel
On 27 April 2017 at 11:37, Don Armstrong wrote: | On Thu, 27 Apr 2017, Dirk Eddelbuettel wrote: | > I don't know, and I tend not to run dated r-base-core packages. | | I'll try to check this out later. Thanks! | > Is that what debian/control ensures? | | Cool; I didn't

Bug#861333: API transition of R packages

2017-04-27 Thread Dirk Eddelbuettel
On 27 April 2017 at 12:49, Don Armstrong wrote: | Control: severity -1 serious | | Do we know if this issue may also mean that any packages built with this | new version are incompatible with older R versions? [I'm thinking so, | but my ABI-fu is not super strong.] I don't know, and I tend not t

Bug#861333: r-base: R packages uploaded to Debian before 14 April 2017 that use .C or .Fortran fail to find objects

2017-04-27 Thread Dirk Eddelbuettel
On 27 April 2017 at 15:45, Johannes Ranke wrote: | Package: r-base | Version: 3.4.0-1 | Severity: normal | | With current R, R packages built for Debian before the upload of R | 3.3.3.20170413-1 | on 14 April that use .C or .Fortran do no work properly, because the functions | calling .C or .

Bug#860776: ITP: r-cran-cellranger -- GNU R package to map spreadsheet cell ranges to rows and columns

2017-04-19 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-cellranger Version : 1.1.0 Upstream Author : Jennifer Bryan * URL or Web page : https://cloud.r-project.org/web/packages/cellranger/index.html * License : MIT Description : GNU R

Bug#860594: ITP: r-cran-rematch -- R package to match regular expressions with a nicer 'api'

2017-04-18 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-rematch Version : 1.0.1-1 Upstream Author : Gabor Csardi * URL or Web page : https://cran.r-project.org/package=rematch * License : MIT Description : R package to match regular

Bug#859493: libgsl2: move libgslcblas.so into a separate package

2017-04-04 Thread Dirk Eddelbuettel
On 4 April 2017 at 11:54, James Cowgill wrote: | Hi, | | On 04/04/17 11:14, Dirk Eddelbuettel wrote: | > On 4 April 2017 at 10:45, James Cowgill wrote: | > | Package: libgsl2 | > | Version: 2.3+dfsg-1 | > | Severity: normal | > | | > | Hi, | > | | > | As a followup f

Bug#859493: libgsl2: move libgslcblas.so into a separate package

2017-04-04 Thread Dirk Eddelbuettel
On 4 April 2017 at 10:45, James Cowgill wrote: | Package: libgsl2 | Version: 2.3+dfsg-1 | Severity: normal | | Hi, | | As a followup from the thread on debian-backports[1], please can you | move libgslcblas.so from libgsl2 into a separate package. This will | allow clean upgrades without conflic

Bug#859291: ITP: r-cran-viridislite -- Default Color Maps from 'matplotlib' (Lite Version)

2017-04-01 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-viridislite Version : 0.2.0 Upstream Author : Simon Garnier * URL or Web page : https://cloud.r-project.org/web/packages/viridisLite/index.html * License : MIT Description : Default

Bug#858882: r-cran-rcppgsl: Missing dependency libgsl-dev

2017-03-28 Thread Dirk Eddelbuettel
On 28 March 2017 at 13:32, Andreas Tille wrote: | Hi Dirk, | | On Tue, Mar 28, 2017 at 05:24:02AM -0500, Dirk Eddelbuettel wrote: | > | Alternatively this could be fixed by moving the script gsl-config from | > | package libgsl-dev to libgsl2. Since you are the maintainer of both | >

Bug#858882: r-cran-rcppgsl: Missing dependency libgsl-dev

2017-03-28 Thread Dirk Eddelbuettel
On 28 March 2017 at 14:16, Adrian Bunk wrote: | On Tue, Mar 28, 2017 at 10:09:28AM +0200, Andreas Tille wrote: | > ... If you want to fix the issue inside | > r-cran-rcppgsl package you need to either convince the release team to | > accept this new upstream version or revert the new version by us

Bug#858882: r-cran-rcppgsl: Missing dependency libgsl-dev

2017-03-28 Thread Dirk Eddelbuettel
The other possible fix is upstream -- I could just not assume I always have gsl-config and make its use conditional. That's probably the best idea going forward to support pure 'run-time, not dev' packages better. Dirk -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#858882: r-cran-rcppgsl: Missing dependency libgsl-dev

2017-03-28 Thread Dirk Eddelbuettel
On 28 March 2017 at 10:09, Andreas Tille wrote: | Package: r-cran-rcppgsl | Version: 0.3.2-1 | Severity: grave | Tags: patch | Justification: renders package unusable | | [ Release team see below how to deal with newer upstream version in unstable | than in testing ] | | Dear Maintainer, | |

Bug#858488: dieharder segfaults when testing the XOR generator

2017-03-22 Thread Dirk Eddelbuettel
On 22 March 2017 at 14:12, Aaron Toponce wrote: | Package: dieharder | Version: 3.31.1-7 | | When testing the XOR generator with dieharder(1), the program segfaults: | | % dieharder -g 207 -a | zsh: segmentation fault dieharder -g 207 -a I can confirm that. There has not been a whole

Bug#857466: marked as done (r-base: CVE-2016-8714: R: Buffer overflow in the LoadEncoding functionality)

2017-03-16 Thread Dirk Eddelbuettel
On 16 March 2017 at 07:33, Charles Plessy wrote: | Hi Dirk and Salvatore, | | > From: Dirk Eddelbuettel | > On 11 March 2017 at 17:56, Salvatore Bonaccorso wrote: | > | | > | The relevant changes seem to be the following, but I might be mistaken. (btw, | > | is there a VCS r

Bug#857120: quantlib FTBFS on mips64el: Build killed with signal TERM after 150 minutes of inactivity

2017-03-15 Thread Dirk Eddelbuettel
On 15 March 2017 at 23:36, Adrian Bunk wrote: | On Wed, Mar 08, 2017 at 04:23:24AM -0600, Dirk Eddelbuettel wrote: | > | > On 8 March 2017 at 11:01, Adrian Bunk wrote: | > | Source: quantlib | > | Version: 1.9.1-1 | > | Severity: important | > | | > | https://buildd.debia

Bug#857143: Please use GTK+3 instead of GTK+2

2017-03-08 Thread Dirk Eddelbuettel
On 8 March 2017 at 13:17, Laurent Bigonville wrote: | Source: gretl | Version: 2016d-2 | Severity: wishlist | | Hi, | | I see that gretl is supporting both GTK+2 and GTK+3 | | Any reasons to stick to GTK+2? Patches welcome. Dirk | Regards, | | Laurent Bigonville | | -- System Information:

Bug#857141: Please enable SSE2 on amd64

2017-03-08 Thread Dirk Eddelbuettel
On 8 March 2017 at 12:54, Laurent Bigonville wrote: | Source: gretl | Version: 2016d-2 | Severity: wishlist | | Hi, | | Shouldn't SSE2 optimisation be enabled on amd64 architectures? | | According to [1], this should be supported in the amd64 port Patches welcome. Dirk | | Regards, | | Lau

Bug#857120: quantlib FTBFS on mips64el: Build killed with signal TERM after 150 minutes of inactivity

2017-03-08 Thread Dirk Eddelbuettel
On 8 March 2017 at 11:01, Adrian Bunk wrote: | Source: quantlib | Version: 1.9.1-1 | Severity: important | | https://buildd.debian.org/status/logs.php?pkg=quantlib&arch=mips64el | | ... | | Testsuite summary for QuantLi

Bug#854473: smtm: smtm not running

2017-02-08 Thread Dirk Eddelbuettel
I got your follow-up email at home rather than in this thread. It seems like it may just be a one-char fix I need to fix: edd@max:~/git/finance-yahooquote(master)$ diff -u YahooQuote.pm /usr/share/perl5/Finance/YahooQuote.pm --- YahooQuote.pm 2015-05-10 11:17:48.927669722 -0500 +++ /usr/s

Bug#854473: smtm: smtm not running

2017-02-07 Thread Dirk Eddelbuettel
severity 854473 thanks I think you simply have no data. Check the Finance::YahooQuote module in package libfinance-yahooquote-perl -- you can test on the commandline via edd@max:~$ yahooquote FB AMZN NFLX GOOG FB Facebook, Inc. 132.06 2/6/2017NMS AMZNAmazon.com, Inc.80

Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)

2017-01-05 Thread Dirk Eddelbuettel
On 6 January 2017 at 02:53, Santiago Vila wrote: | Hi. | | I've triggered rebuilds in reproducible builds Why? That wasn't what I asked you to do. | and it also fails there: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rmpi.html Well, doh. Computers and being determi

Bug#850336: rmpi: FTBFS (Cannot find mpi.h header file)

2017-01-05 Thread Dirk Eddelbuettel
On 6 January 2017 at 00:53, Santiago Vila wrote: | Package: src:rmpi | Version: 0.6-6-1 | Severity: serious | | Dear maintainer: | | I tried to build this package in stretch with "dpkg-buildpackage -B" | but it failed: | | ---

Bug#846089: r-cran-rcmdr/armel unsatisfiable Depends: r-cran-rgl

2016-12-30 Thread Dirk Eddelbuettel
[ G, this sat in an unsent Emacs mail buffer for 10 days. Packages was long uploaded. Thanks again for the reminder --Dirk ] On 20 December 2016 at 11:25, Adrian Bunk wrote: | On Mon, Nov 28, 2016 at 01:18:32PM -0600, Dirk Eddelbuettel wrote: | > | > On 28 November 2016 at

Bug#847750: rmysql: FTBFS on mips64el

2016-12-28 Thread Dirk Eddelbuettel
ules binary-arch the error still appears. The bug is closed as far as I am concerned. 0.10-3 has been uploaded, it used Source: rmysql Section: gnu-r Priority: optional Maintainer: Dirk Eddelbuettel Build-Depends: debhelper (>= 7.0.0), cdbs, r-base-dev (>= 3.3.2), libmaria

Bug#841611: ruby-gsl: FTBFS: ERROR: Test "ruby2.3" failed: /usr/lib/ruby/2.3.0/rubygems/core_ext/kernel_require.rb:55:in `require': /<>/ruby-gsl-1.16.0.6+dfsg1/debian/ruby-gsl/usr/lib/x86_64

2016-12-22 Thread Dirk Eddelbuettel
On 22 December 2016 at 16:50, Bálint Réczey wrote: | 2016-12-22 16:39 GMT+01:00 Dirk Eddelbuettel : | > | > Let me restart: | > | > 1) GSL is at version 2.2. It is in Debian. | > | > 2) It has optional support for old stuff. We all agree that old stuff | > is not

Bug#841611: ruby-gsl: FTBFS: ERROR: Test "ruby2.3" failed: /usr/lib/ruby/2.3.0/rubygems/core_ext/kernel_require.rb:55:in `require': /<>/ruby-gsl-1.16.0.6+dfsg1/debian/ruby-gsl/usr/lib/x86_64

2016-12-22 Thread Dirk Eddelbuettel
Can we agree to delete material that has been quoted several times already? On 22 December 2016 at 14:56, Bálint Réczey wrote: | > I think we're closing to deadlock situation. I think we all would like to | > move to 2.1 everywhere. You say you can, so you want to do more deprecated | > function

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