Bug#1067950: hdf5: diff for NMU version 1.10.10+repack-3.3

2024-03-29 Thread Gilles Filippini
Andrey Rakhmatullin a écrit le 29/03/2024 à 12:26 : Package: hdf5 Version: 1.10.10+repack-3.2 Severity: normal Tags: patch pending Dear maintainer, I've prepared an NMU for hdf5 (versioned as 1.10.10+repack-3.3) and uploaded it to DELAYED/3. Please feel free to tell me if I should delay it

Bug#1067118: nmu: hdf5_1.10.10+repack-3.1

2024-03-18 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, During the ongoing 64 bit time_t transition it seems HDF5 should have been triggered *after* curl. See #1065331. As I understand it

Bug#1065331: libhdf5-103-1t64: depends on libcurl4 instead of libcurl4t64

2024-03-18 Thread Gilles Filippini
Hi Vincent, Vincent Lefevre a écrit le 03/03/2024 à 01:08 : Package: libhdf5-103-1t64 Version: 1.10.10+repack-3.1 Severity: serious libhdf5-103-1t64 depends on libcurl4 instead of libcurl4t64. This makes the upgrade of curl impossible. How am I expected to solve this issue? As I understand

Bug#1064095: hdf5: NMU diff for 64-bit time_t transition

2024-03-18 Thread Gilles Filippini
Hi Steve, Steve Langasek a écrit le 01/03/2024 à 06:06 : Dear maintainer, Please find attached a final version of this patch for the time_t transition. This patch is being uploaded to unstable. Note that this adds a versioned build-dependency on dpkg-dev, to guard against accidental

Bug#1050952: r-bioc-rhdf5lib: autopkgtest regression: Expected '1.10.8', got '1.10.10'

2023-08-31 Thread Gilles Filippini
Source: r-bioc-rhdf5lib Version: 1.6.3+dfsg-1 Severity: serious Justification: Test regression -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, See https://ci.debian.net/data/autopkgtest/unstable/amd64/r/r-bioc-rhdf5lib/37206202/log.gz. > 69s - FAILED[data]:

Bug#1042822: med-fichier: Please upgrade to latest med-fichier version aka 5.0.0

2023-08-31 Thread Gilles Filippini
Christophe Trophime a écrit le 31/08/2023 à 18:57 : - Original Message - From: "Gilles Filippini" To: "Christophe Trophime" , 1042...@bugs.debian.org Sent: Thursday, August 31, 2023 6:47:36 PM Subject: Re: Bug#1042822: med-fichier: Please upgrade to latest med-

Bug#1042822: med-fichier: Please upgrade to latest med-fichier version aka 5.0.0

2023-08-31 Thread Gilles Filippini
Hi Christophe, Christophe Trophime a écrit le 01/08/2023 à 14:35 : Source: med-fichier Version: Please upgrade to 5.0.0 version Severity: normal Dear Maintainer, It would be great if med was upgraded to enable use a Salome 9.11 generated mesh files. Where is it downloadable from? Thx, _g.

Bug#1025492: openjdk-17: Upstream commit f71b21b causes segfault in hdf5 java test suite on arches i386 and mips64el

2022-12-05 Thread Gilles Filippini
On Mon, 05 Dec 2022 20:19:37 +0100 Gilles Filippini wrote: Package: openjdk-17 Version: 17~14-1 Severity: serious Tags: upstream Justification: makes unrelated software on the system break -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, A few weeks ago default-jdk was switched from

Bug#1025492: openjdk-17: Upstream commit f71b21b causes segfault in hdf5 java test suite on arches i386 and mips64el

2022-12-05 Thread Gilles Filippini
Package: openjdk-17 Version: 17~14-1 Severity: serious Tags: upstream Justification: makes unrelated software on the system break -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, A few weeks ago default-jdk was switched from openjdk-11 to openjdk-17. Afterward hdf5 has been suffering FTBFS

Bug#1025232: hdf5: Build dependencies on openjdk-11 that will not be in bookworm

2022-12-02 Thread Gilles Filippini
Hi, Sebastian Ramacher a écrit le 01/12/2022 à 10:25 : Source: hdf5 Version: 1.10.8+repack-4 Severity: serious Tags: sid bookworm X-Debbugs-Cc: sramac...@debian.org openjdk-11 will not be be part of bookworm (see #1023237). Please adapt the package to use the default JDK version (openjdk-17)

Bug#1023446: libhdf5-openmpi-dev: h5pcc configured as static build

2022-11-22 Thread Gilles Filippini
Hi Drew, Drew Parsons a écrit le 15/11/2022 à 16:28 : h5py is building fine against the shared libraries with HDF5_USE_SHLIB=yes, but leaves a question about rpath. Notice that `h5pcc --showconfig -shlib` includes "-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lhdf5_hl -lhdf5 -Wl,-rpath

Bug#1023446: libhdf5-openmpi-dev: h5pcc configured as static build

2022-11-06 Thread Gilles Filippini
Hi Drew, Drew Parsons a écrit le 04/11/2022 à 11:27 : Package: libhdf5-openmpi-dev Version: 1.10.8+repack-1 Severity: important Control: block 1020054 by -1 h5pcc is showing an unexpected default configuration: $ h5pcc --showconfig gcc -I/usr/include/hdf5/openmpi

Bug#1017997: hdf5 ftbfs on s390x

2022-08-23 Thread Gilles Filippini
Hi Steve, Steve Langasek a écrit le 23/08/2022 à 22:40 : Package: hdf5 Version: 1.10.8+repack-1 Severity: serious Tags: patch Justification: ftbfs User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu kinetic ubuntu-patch Hi Gilles, hdf5 has been failing to build from source on s390x.

Bug#1011373: jhdf: FTBFS against hdf5 1.12.2 currently in experimental

2022-05-21 Thread Gilles Filippini
Source: jhdf Version: 2.11.0+dfsg-5 Severity: important Tags: ftbfs -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, While rebuilding jhdf against hdf5 1.12.2 in experimental, il failed with: h5Constants.c: In function ‘Java_ncsa_hdf_hdf5lib_HDF5Constants_H5I_1REFERENCE’:

Bug#1010202: MatIO test failures against HDF5 1.12.0

2022-05-19 Thread Gilles Filippini
with libhdf5 support). Best regards, Thomas Am 19.05.2022 um 10:06 schrieb Sébastien Villemot: Hi Thomas, It turns out that running the testsuite sequentially fixes the problem, as explained by Gilles Filippini (who maintains HDF5 in Debian), see: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1010202

Bug#1010202: libmatio: FTBFS against hdf5 1.12.0 currently in experimental - 3 failed tests

2022-05-17 Thread Gilles Filippini
Hi Sébastien, Gilles Filippini a écrit le 02/05/2022 à 11:04 : Hi, Gilles Filippini a écrit le 29/04/2022 à 14:10 : Hi Sébastien, Sébastien Villemot a écrit le 29/04/2022 à 11:45 : Hi Gilles, Le mardi 26 avril 2022 à 10:38 +0200, Gilles Filippini a écrit : Source: libmatio Version: 1.5.23

Bug#1010202: libmatio: FTBFS against hdf5 1.12.0 currently in experimental - 3 failed tests

2022-05-02 Thread Gilles Filippini
Hi, Gilles Filippini a écrit le 29/04/2022 à 14:10 : Hi Sébastien, Sébastien Villemot a écrit le 29/04/2022 à 11:45 : Hi Gilles, Le mardi 26 avril 2022 à 10:38 +0200, Gilles Filippini a écrit : Source: libmatio Version: 1.5.23-1 Severity: important Tags: ftbfs While rebuilding libmatio

Bug#1010202: libmatio: FTBFS against hdf5 1.12.0 currently in experimental - 3 failed tests

2022-04-29 Thread Gilles Filippini
Hi Sébastien, Sébastien Villemot a écrit le 29/04/2022 à 11:45 : Hi Gilles, Le mardi 26 avril 2022 à 10:38 +0200, Gilles Filippini a écrit : Source: libmatio Version: 1.5.23-1 Severity: important Tags: ftbfs While rebuilding libmatio 1.5.23 against hdf5 1.12.0, 3 testcases failed

Bug#892058: debian-keyring: please automatically send reminder emails to people whose keys will expire soon

2022-04-16 Thread Gilles Filippini
Thanks for the ping! This is very much appreciated. Best, _g.

Bug#998383: nheko: nheko/{armel,armhf} has unsatisfiable dependency

2022-01-02 Thread Gilles Filippini
On Wed, 3 Nov 2021 14:25:41 +0200 Adrian Bunk wrote: Control: reassign -1 src:gst-plugins-good1.0 1.18.5-1 Control: retitle -1 gstreamer1.0-qt5 should again be built on armel/armhf Control: affects -1 nheko On Wed, Nov 03, 2021 at 12:03:20PM +0100, Sebastian Ramacher wrote: > Source: nheko >

Bug#987584: docker.io: docker-proxy does not bind to ipv6 "all network" address

2021-11-08 Thread Gilles Filippini
On Thu, 29 Apr 2021 01:54:56 +0800 Shengjing Zhu wrote: On Mon, Apr 26, 2021 at 1:15 PM Jérémy Viès wrote: > > Package: docker.io > Version: 20.10.5+dfsg1-1+b1 > Severity: important > Tags: ipv6 > > Dear Maintainer, > > >* What led up to the situation? > I'm trying to expose some web app

Bug#995594: libhdf5[-openmpi]-dev: missing Depends: libcurl-dev

2021-10-12 Thread Gilles Filippini
Drew Parsons a écrit le 04/10/2021 à 21:14 : On 2021-10-03 12:15, Gilles Filippini wrote: Drew Parsons a écrit le 02/10/2021 à 22:17 : ... Since h5pcc and h5cc invoke -lcurl, libhdf5-openmpi-dev, libhdf5-dev (and probably libhdf5-mpich-dev also) should declare Depends: libcurl-dev ... I

Bug#995594: libhdf5[-openmpi]-dev: missing Depends: libcurl-dev

2021-10-03 Thread Gilles Filippini
Hi, Drew Parsons a écrit le 02/10/2021 à 22:17 : Package: libhdf5-openmpi-dev Version: 1.10.7+repack-2 Severity: serious Justification: FTBFS Control: affects -1 src:fenics-dolfinx The hdf5 compiler wrappers declare -lcurl as a linked library e.g. $ h5cc -showconfig | grep curl

Bug#994109: scilab FTBFS with hdf5 1.10.7

2021-09-14 Thread Gilles Filippini
Julien Puydt a écrit le 13/09/2021 à 08:51 : Excellent! Please commit to salsa but don't upload yet Done. Best, _g.

Bug#994109: scilab FTBFS with hdf5 1.10.7

2021-09-12 Thread Gilles Filippini
b-6.1.1+dfsg2/debian/changelog 2021-09-12 14:50:46.0 +0200 @@ -1,3 +1,11 @@ +scilab (6.1.1+dfsg2-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * New patch hdf5-1.10.7.patch to disable H5_NO_DEPRECATED_SYMBOLS which +causes FTBFS against HDF5 1.10.7 (Closes: #994109) + +

Bug#993825: buster-pu: package hdf5/1.10.6+repack-4+deb11u1

2021-09-06 Thread Gilles Filippini
ency to (>= 3.3-3~) (Closes: +#992068) + + -- Gilles Filippini Sun, 15 Aug 2021 15:56:44 +0200 + hdf5 (1.10.6+repack-4) unstable; urgency=medium * Revert support for read-only S3 virtual file driver, as it introduced diff -Nru hdf5-1.10.6+repack/debian/control hdf5-1.10.6+repack/debian/

Bug#992068: libhdf5-mpich-dev: please bump libmpich-dev dependency to (>= 3.3-3~)

2021-08-11 Thread Gilles Filippini
Andreas Beckmann a écrit le 10/08/2021 à 17:54 : Package: libhdf5-mpich-dev Version: 1.10.6+repack-4 Severity: serious Tags: patch User: debian...@lists.debian.org Usertags: piuparts During an piuparts upgrade test of libhdf5-mpich-dev on the upgrade path squeeze -> wheezy -> jessie ->

Bug#988722: postgresql-common: Upgrading cluster with postgis does not migrate tables using postgis

2021-06-16 Thread Gilles Filippini
Sebastian Ramacher a écrit le 16/06/2021 à 17:22 : Thanks for uploading the fix! Unfortunately, the changes to the S3 virtual file driver caused regressions in hdf5's reverse dependencies (some of them are caused by missing dependencies for -lcrypto and -lcurl). See

Bug#988722: postgresql-common: Upgrading cluster with postgis does not migrate tables using postgis

2021-06-14 Thread Gilles Filippini
Hi Andreas, Andreas Beckmann a écrit le 14/06/2021 à 10:18 : On 08/06/2021 13.05, Sebastian Ramacher wrote: Here it is. Now testing upgrades ... There were some new symbols ... but they appeared independently of my changes (I built in bullseye, not sid, in case it does matter). Tests have

Bug#988722: postgresql-common: Upgrading cluster with postgis does not migrate tables using postgis

2021-06-08 Thread Gilles Filippini
Andreas Beckmann a écrit le 08/06/2021 à 11:57 : On 08/06/2021 08.27, Andreas Beckmann wrote: Or, wait, easier: we can reintroduce metapackages libhdf5*-103 depending on libhdf5*-103-1 and all the other packages containing libraries that were in the merged package in buster. I actually like

Bug#988722: postgresql-common: Upgrading cluster with postgis does not migrate tables using postgis

2021-06-08 Thread Gilles Filippini
Control: reassign -1 postgresql-13-postgis-3 Andreas Beckmann a écrit le 08/06/2021 à 08:27 : An alternative solution would be to rename libhdf5*-103-1 back to libhdf5*-103 and add dependencies on the split out libraries (s.t. e.g. dependencies of a buster package depending on libhdf5-103 for

Bug#988722: postgresql-common: Upgrading cluster with postgis does not migrate tables using postgis

2021-06-07 Thread Gilles Filippini
Hi, On Wed, 2 Jun 2021 22:22:04 +0200 Sebastian Ramacher wrote: Hi Gilles, hi Andreas, On 2021-06-01 14:15:52 +0200, Andreas Beckmann wrote: > On Tue, 18 May 2021 20:36:23 +0200 Dennis Filder wrote: > > One more observation: Bullseye's gdal-data 3.2.1+dfsg-1 defines a > > Breaks: libgdal20

Bug#968559: libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing

2020-11-08 Thread Gilles Filippini
Drew Parsons a écrit le 08/11/2020 à 05:17 : > Probably we should check with the update-alternatives developers first, > they may have some ideas. Certainly they should be able to explain > exactly why installing openmpi-bin or mpich causes the hdf5-mpi > alternative to disappear. Would you mind

Bug#968559: libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing

2020-11-07 Thread Gilles Filippini
Gilles Filippini a écrit le 07/11/2020 à 19:36 : > Drew Parsons a écrit le 06/11/2020 à 04:02 : >> On 2020-11-06 02:09, Gilles Filippini wrote: >>>> >>>> But we should document (or fix if possible) that this alternatives >>>> mechanism is a

Bug#968559: libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing

2020-11-07 Thread Gilles Filippini
Drew Parsons a écrit le 06/11/2020 à 04:02 : > On 2020-11-06 02:09, Gilles Filippini wrote: >>> >>> But we should document (or fix if possible) that this alternatives >>> mechanism is a little fragile, and sometimes the link needs to be >>> refresh with >

Bug#968559: libhdf5-openmpi-dev: hdf5-mpi.pc alternative sometimes goes missing

2020-11-05 Thread Gilles Filippini
Control: tag -1 moreinfo Hi Drew, On Mon, 17 Aug 2020 19:23:05 +0800 Drew Parsons wrote: > Package: libhdf5-openmpi-dev > Version: 1.10.6+repack-2 > Severity: normal > > We've set up libhdf5-openmpi-dev (and libhdf5-mpich-dev) to use the > alternatives mechanism to configure a symlink

Bug#958174: hdf5: please add the hdf5plugins

2020-11-02 Thread Gilles Filippini
Gilles Filippini a écrit le 24/04/2020 à 10:03 : > picca a écrit le 22/04/2020 à 16:07 : >> I found also this link with all the filter available around hdf5. >> so I tought that the hdfgroup would provide a tar.gz with all of them >> pre packaged in source forme. >>

Bug#973261: libhdf5-openmpi-dev: installing requires /proc being mounted

2020-11-01 Thread Gilles Filippini
Gilles Filippini a écrit le 31/10/2020 à 15:11 : > Hi Josh, > > Johannes 'josch' Schauer a écrit le 27/10/2020 à 18:45 : >> Package: libhdf5-openmpi-dev >> Version: 1.10.6+repack-2 >> Severity: wishlist >> >> Hi, >> >> when installing libh

Bug#973261: libhdf5-openmpi-dev: installing requires /proc being mounted

2020-10-31 Thread Gilles Filippini
Hi Josh, Johannes 'josch' Schauer a écrit le 27/10/2020 à 18:45 : > Package: libhdf5-openmpi-dev > Version: 1.10.6+repack-2 > Severity: wishlist > > Hi, > > when installing libhdf5-openmpi-dev in a chroot that doesn't have /proc > mounted, one will get the following error: > > Setting up

Bug#969633: transition: json-simple

2020-09-20 Thread Gilles Filippini
Hi Emilio, Emilio Pozuelo Monfort a écrit le 20/09/2020 à 18:50 : > On 06/09/2020 13:38, Gilles Filippini wrote: >> Emilio Pozuelo Monfort a écrit le 06/09/2020 à 12:19 : >>> On 06/09/2020 11:53, Gilles Filippini wrote: >>>> Package: release.debian.org &

Bug#969633: transition: json-simple

2020-09-06 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 06/09/2020 à 12:19 : > On 06/09/2020 11:53, Gilles Filippini wrote: >> Package: release.debian.org >> Severity: normal >> User: release.debian@packages.debian.org >> Usertags: transition >> >> Hi, >> >>

Bug#969633: transition: json-simple

2020-09-06 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, I'd like to transition json-simple 3.1.1 surrently sitting into experimental. The name of the library doens't change, but reverse

Bug#968937: src:derby: Please add support to build against libjson-simple-java >= 3

2020-09-05 Thread Gilles Filippini
tony mancill a écrit le 05/09/2020 à 22:29 : > One more comment on the patch for this bug... > > It's a little odd that we're patching the build system for a specific > version of json-simple *at build time* when none of the binary packages > declares a dependency on this. > > For a short period

Bug#968937: src:derby: Please add support to build against libjson-simple-java >= 3

2020-09-05 Thread Gilles Filippini
Hi Emmanuel, Could you please review / apply this patch? Derby is the last blocker for this json-simple transition. Thanks in advance. _g. On Mon, 24 Aug 2020 10:37:35 +0200 Gilles Filippini wrote: > Package: src:derby > Version: 10.14.2.0-1 > Severity: normal > Tags: patch >

Bug#968937: src:derby: Please add support to build against libjson-simple-java >= 3

2020-08-24 Thread Gilles Filippini
14.2.0/debian/changelog2018-05-16 18:01:03.0 +0200 +++ derby-10.14.2.0/debian/changelog2020-08-24 09:49:39.0 +0200 @@ -1,3 +1,10 @@ +derby (10.14.2.0-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Tentative support for json-simple >= 3 + + -- Gilles Filipp

Bug#962560: code-saturne built-in file editor fails

2020-06-16 Thread Gilles Filippini
Hi Clinton, On Tue, 9 Jun 2020 14:08:12 -0700 Clinton Winant wrote: > Package: code-saturne > Version: 6.0 > > Severity: grave - makes the package unusable or mostly so: output in > built-in editor causes SaturneGUI to crash > > When I try to examine output files with the code-saturne

Bug#960589: src:i2p: Please add support to build against libjson-simple-java >= 3

2020-05-30 Thread Gilles Filippini
Hi, On Thu, 14 May 2020 19:42:37 +0200 Gilles Filippini wrote: > On Thu, 14 May 2020 12:38:36 +0200 Gilles Filippini wrote: > > Package: src:i2p > > Version: 0.9.45-1 > > Severity: normal > > Tags: patch > > > > Hi, > > > > I'd like t

Bug#960639: Bug#960639: src:orthanc-imagej: Please add support to build against libjson-simple-java >= 3

2020-05-28 Thread Gilles Filippini
Sébastien Jodogne a écrit le 28/05/2020 à 11:28 : > Dear Gilles, > > I finally managed to find a few hours to finalize your patch. I had to > extend it a bit so for it to work correctly [1]. > > Version "1.2+dfsg-2" of the package has just been uploaded accordingly. Thanks!! Best, _ni.

Bug#960632: src:plm: Please add support to build against libjson-simple-java >= 3

2020-05-17 Thread Gilles Filippini
Gilles Filippini a écrit le 17/05/2020 à 23:29 : > Gilles Filippini a écrit le 17/05/2020 à 22:51 : >> Hi Martin, >> >> Martin Quinson a écrit le 17/05/2020 à 22:31 : >>> Hello again, >>> >>> when I try to launch the program with your

Bug#960632: src:plm: Please add support to build against libjson-simple-java >= 3

2020-05-17 Thread Gilles Filippini
Gilles Filippini a écrit le 17/05/2020 à 22:51 : > Hi Martin, > > Martin Quinson a écrit le 17/05/2020 à 22:31 : >> Hello again, >> >> when I try to launch the program with your patch applied, I get the >> following backtrace: >> >> Exception in thre

Bug#960632: src:plm: Please add support to build against libjson-simple-java >= 3

2020-05-17 Thread Gilles Filippini
Hi Martin, Martin Quinson a écrit le 17/05/2020 à 22:31 : > Hello again, > > when I try to launch the program with your patch applied, I get the > following backtrace: > > Exception in thread "main" java.lang.ClassCastException: class > org.json.simple.JsonArray cannot be cast to class >

Bug#960639: Bug#960639: src:orthanc-imagej: Please add support to build against libjson-simple-java >= 3

2020-05-15 Thread Gilles Filippini
Andreas Tille a écrit le 15/05/2020 à 12:49 : > Hi Sébastien, > > On Fri, May 15, 2020 at 07:50:01AM +0200, Sébastien Jodogne wrote: >> As far as I'm concerned, I don't have time to have a look at this >> problem in the upstream project before several months. The Orthanc >> project is indeed

Bug#960692: src:netbeans: Please add support to build against libjson-simple-java >= 3

2020-05-15 Thread Gilles Filippini
Package: src:netbeans Version: 10.0-3 Severity: normal Tags: patch -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, I'd like to transition json-simple 3.1.1 to unstable, but netbeans is a blocker since it builds against libjson-simple-java << 3 only. The json-simple classes used by

Bug#960654: [Debian-med-packaging] Bug#960654: src:biojava4-live: Please add support to build against libjson-simple-java >= 3

2020-05-15 Thread Gilles Filippini
Hi Olivier, olivier sallou a écrit le 15/05/2020 à 10:59 : > Hi, > thanks for the patch. > However, if json-simple API/ABI is broken, I think that package should > be kinda libjson-simple3-java to keep compatibility with existing > packages using old versions and allow transition of packages to

Bug#960654: src:biojava4-live: Please add support to build against libjson-simple-java >= 3

2020-05-15 Thread Gilles Filippini
* Non-maintainer upload. + * Tentative fix to build against json-simple 3 + + -- Gilles Filippini Fri, 15 May 2020 08:50:46 +0200 + biojava4-live (4.2.12+dfsg-2) unstable; urgency=medium * Team upload. diff -Nru biojava4-live-4.2.12+dfsg/debian/patches/use_simple_json biojava4-live-4.2.12+dfsg/

Bug#960652: src:jts: Please add support to build against libjson-simple-java >= 3

2020-05-15 Thread Gilles Filippini
uted at build time by debian/rules. + . + With these tricks the package is compatible with json-simple 2.x and 3.x. +Author: Gilles Filippini +Index: jts-1.16.1+ds/modules/io/common/src/main/java/org/locationtech/jts/io/geojson/

Bug#960639: src:orthanc-imagej: Please add support to build against libjson-simple-java >= 3

2020-05-14 Thread Gilles Filippini
* Non-maintainer upload. + * tentative patch to build against json-simple 3 + + -- Gilles Filippini Thu, 14 May 2020 23:29:49 +0200 + orthanc-imagej (1.2+dfsg-1) unstable; urgency=medium * New upstream version. (Closes: #912363) diff -Nru orthanc-imagej-1.2+dfsg/debian/patches/json-simple-3

Bug#960632: src:plm: Please add support to build against libjson-simple-java >= 3

2020-05-14 Thread Gilles Filippini
mple 3 + + -- Gilles Filippini Thu, 14 May 2020 18:05:12 +0200 + plm (2.6+repack-3) unstable; urgency=medium * Add run-time dependencies on default-jdk, jython and jruby. diff -Nru plm-2.6+repack/debian/patches/json-simple-3.patch plm-2.6+repack/debian/patches/json-simple-3.patch --- plm-2.6+repack/

Bug#960589: src:i2p: Please add support to build against libjson-simple-java >= 3

2020-05-14 Thread Gilles Filippini
On Thu, 14 May 2020 12:38:36 +0200 Gilles Filippini wrote: > Package: src:i2p > Version: 0.9.45-1 > Severity: normal > Tags: patch > > Hi, > > I'd like to transition json-simple 3.1.1 to unstable, but i2p is a blocker > since it builds against libjson-simple-java <

Bug#960612: src:tika: Please add support to build against libjson-simple-java >= 3

2020-05-14 Thread Gilles Filippini
debian/changelog 2019-08-05 11:41:25.0 +0200 +++ tika-1.22/debian/changelog 2020-05-14 15:14:44.0 +0200 @@ -1,3 +1,10 @@ +tika (1.22-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Tentative patch to build against json-simple >= 3 + + -- Gilles Filippini Thu, 14

Bug#960589: src:i2p: Please add support to build against libjson-simple-java >= 3

2020-05-14 Thread Gilles Filippini
debian/changelog 2020-04-12 16:50:00.0 +0200 +++ i2p-0.9.45/debian/changelog 2020-05-13 11:12:38.0 +0200 @@ -1,3 +1,10 @@ +i2p (0.9.45-1.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Tentative support for json-simple >= 3 + + -- Gilles Filippini Wed, 13 May 2020

Bug#955694: scilab: FTBFS: Scilab cannot create Scilab Java Main-Class (we have not been able to find the main Scilab class. Check if the Scilab and thirdparty packages are available).

2020-04-30 Thread Gilles Filippini
Control: found -1 5.5.2-4 Control: found -1 6.0.1-10 Julien Puydt a écrit le 23/04/2020 à 09:37 : > Hi, > > Le jeudi 23 avril 2020 à 00:20 +0200, Gilles Filippini a écrit : >> Gilles Filippini a écrit le 22/04/2020 à 09:59 : >>> I think I've eventually found a fix

Bug#949780: maptool: Maptool segfaults

2020-04-24 Thread Gilles Filippini
Gilles Filippini a écrit le 24/04/2020 à 15:08 : > On Sun, 26 Jan 2020 12:39:01 + ael wrote: >> On Sat, Jan 25, 2020 at 06:26:35PM -0800, Joseph Herlant wrote: >>> Hi, >>> >>> >>> You mention in the bug there that you were able to run your pbf by

Bug#949780: maptool: Maptool segfaults

2020-04-24 Thread Gilles Filippini
On Sun, 26 Jan 2020 12:39:01 + ael wrote: > On Sat, Jan 25, 2020 at 06:26:35PM -0800, Joseph Herlant wrote: > > Hi, > > > > > > You mention in the bug there that you were able to run your pbf by > > compiling maptool from the git repo. What compilation flags did you > > use? > > I just

Bug#958174: hdf5: please add the hdf5plugins

2020-04-24 Thread Gilles Filippini
picca a écrit le 22/04/2020 à 16:07 : > Gilles Filippini writes: > >> Aren't most of these filters available in the pytables and bitshuffle >> packages? > > It seems to me that these filters are provided but not installed system > wide under the hdf5 plugin dire

Bug#958530: sqlite3: Please configure a default search path to load extensions from

2020-04-23 Thread Gilles Filippini
Package: sqlite3 Version: 3.31.1-4 Severity: wishlist -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, The load_extension feature of sqlite3 searchs for the specified extensions into the system's default path for shared libraries. But these extensions shouldn't be installed into these paths

Bug#955694: scilab: FTBFS: Scilab cannot create Scilab Java Main-Class (we have not been able to find the main Scilab class. Check if the Scilab and thirdparty packages are available).

2020-04-22 Thread Gilles Filippini
Control: tag -1 + patch Gilles Filippini a écrit le 22/04/2020 à 19:35 : > Gilles Filippini a écrit le 22/04/2020 à 09:59 : >> Hi, >> >> Matthias Klose a écrit le 20/04/2020 à 12:49 : >>> On 4/20/20 11:52 AM, Gilles Filippini wrote: >>>> I'd like to

Bug#955694: scilab: FTBFS: Scilab cannot create Scilab Java Main-Class (we have not been able to find the main Scilab class. Check if the Scilab and thirdparty packages are available).

2020-04-22 Thread Gilles Filippini
Gilles Filippini a écrit le 22/04/2020 à 09:59 : > Hi, > > Matthias Klose a écrit le 20/04/2020 à 12:49 : >> On 4/20/20 11:52 AM, Gilles Filippini wrote: >>> I'd like to do a bisect between openjdk-11 11.0.6+10-2 and 11.0.7+9-1 to >>> better unders

Bug#958174: hdf5: please add the hdf5plugins

2020-04-22 Thread Gilles Filippini
Hi Frédéric, Picca Frédéric-Emmanuel a écrit le 19/04/2020 à 12:41 : > > Source: hdf5 > Severity: normal > > Dear Maintainer, > > I saw on the hdf5 group website that they provide also hdf5plugin > > https://www.hdfgroup.org/downloads/hdf5/ > > Is it possible to add these plugins in the hdf5

Bug#955694: scilab: FTBFS: Scilab cannot create Scilab Java Main-Class (we have not been able to find the main Scilab class. Check if the Scilab and thirdparty packages are available).

2020-04-22 Thread Gilles Filippini
Hi, Matthias Klose a écrit le 20/04/2020 à 12:49 : > On 4/20/20 11:52 AM, Gilles Filippini wrote: >> I'd like to do a bisect between openjdk-11 11.0.6+10-2 and 11.0.7+9-1 to >> better understand the problem but I can't find the corresponding branch >> on the openjdk Merc

Bug#955694: scilab: FTBFS: Scilab cannot create Scilab Java Main-Class (we have not been able to find the main Scilab class. Check if the Scilab and thirdparty packages are available).

2020-04-20 Thread Gilles Filippini
Control: tags -1 + help Lucas Nussbaum a écrit le 03/04/2020 à 21:55 : > Source: scilab > Version: 6.1.0+dfsg1-1 > Severity: serious > Justification: FTBFS on amd64 > Tags: bullseye sid ftbfs > Usertags: ftbfs-20200402 ftbfs-bullseye > > Hi, > > During a rebuild of all packages in sid, your

Bug#955456: bitshuffle: diff for NMU version 0.3.5-3.1

2020-04-07 Thread Gilles Filippini
--- bitshuffle-0.3.5/debian/changelog 2019-12-01 19:03:38.0 +0100 +++ bitshuffle-0.3.5/debian/changelog 2020-04-07 20:50:47.0 +0200 @@ -1,3 +1,21 @@ +bitshuffle (0.3.5-3.1) unstable; urgency=medium + + * Non-maintainer upload. + + [ Drew Parsons , Gilles Filippini ] + * Closes

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-06 Thread Gilles Filippini
Control: tags -1 + patch Gilles Filippini a écrit le 06/04/2020 à 14:23 : > Drew Parsons a écrit le 06/04/2020 à 05:08 : >> On 2020-04-06 09:56, Drew Parsons wrote: >>> On 2020-04-06 01:48, Gilles Filippini wrote: >>>> Drew Parsons a écrit le 05/04/2020 à 18:5

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-06 Thread Gilles Filippini
Drew Parsons a écrit le 06/04/2020 à 05:08 : > On 2020-04-06 09:56, Drew Parsons wrote: >> On 2020-04-06 01:48, Gilles Filippini wrote: >>> Drew Parsons a écrit le 05/04/2020 à 18:57 : >>>> >>>> Another option is to create an environment variable to fo

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-05 Thread Gilles Filippini
Drew Parsons a écrit le 05/04/2020 à 18:57 : > On 2020-04-05 22:34, Gilles Filippini wrote: >> I suspect a mismatch between mpi and serial build-depdencies: >> >> python3-h5py-serial + libhdf5-dev    => OK >> python3-h5py-serial + libhdf5-openmpi-dev    => KO

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-05 Thread Gilles Filippini
Drew Parsons a écrit le 05/04/2020 à 15:28 : > On 2020-04-05 20:38, Gilles Filippini wrote: >>> >>> But it must be something else from these new h5py upstream patches >>> that's leading to any other bitshuffle errors (the ones apart from the >>> file-not-

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-05 Thread Gilles Filippini
Drew Parsons a écrit le 03/04/2020 à 15:08 : > On 2020-04-03 20:13, Gilles Filippini wrote: >> >> This is not related to the ongoing hdf5 transition, but to the recent >> uploads of h5py >= 2.10.0-3. Before triggering the hdf5 transition I've >> checked that

Bug#955456: FTBFS: test file tmp_test_filters.h5 does not exist

2020-04-03 Thread Gilles Filippini
Hi, On Wed, 01 Apr 2020 11:47:33 +0800 Drew Parsons wrote: > Package: bitshuffle > Version: 0.3.5-3 > Severity: serious > Justification: FTBFS > Control: block 954654 by -1 > > bitshuffle fails to build against hdf5: 1.10.6+repack-1, because > tmp_test_filters.h5 does not exist > > OSError:

Bug#950684: Debian Bug #950684

2020-04-02 Thread Gilles Filippini
Johannes Schauer a écrit le 02/04/2020 à 22:57 : > Quoting Gilles Filippini (2020-04-02 22:37:42) >> The problem occurs in both cases: >> >> $ $ sudo sbuild-createchroot --make-sbuild-tarball=foo.tar.gz \ >> --chroot-prefix=foo --keep-sbuild-chroot-dir unstable \ >&

Bug#950684: Debian Bug #950684

2020-04-02 Thread Gilles Filippini
Johannes Schauer a écrit le 02/04/2020 à 01:59 : > Hi, > > Quoting Gilles Filippini (2020-03-21 15:28:32) >> On Wed, 26 Feb 2020 19:59:20 +0100 Johannes Schauer wrote: >>> On Sat, 22 Feb 2020 17:45:36 +0100 Johannes Schauer >>> wrote: >>>> Q

Bug#954654: transition: hdf5

2020-03-28 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 27/03/2020 à 13:29 : > Control: tags -1 confirmed > > On 22/03/2020 12:19, Gilles Filippini wrote: >> Package: release.debian.org >> Severity: normal >> User: release.debian@packages.debian.org >> Usertags: transition >

Bug#954654: transition: hdf5

2020-03-22 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi Release Team, I'd like to transition hdf5 1.10.6+repack-1~exp5 currently sitting in experimental. Among the 112 tested reverse

Bug#950684: Debian Bug #950684

2020-03-21 Thread Gilles Filippini
Hi, On Wed, 26 Feb 2020 19:59:20 +0100 Johannes Schauer wrote: > Hi, > > On Sat, 22 Feb 2020 17:45:36 +0100 Johannes Schauer wrote: > > Quoting Jörg Frings-Fürst (2020-02-22 17:36:10) > > > Am Samstag, den 22.02.2020, 17:17 +0100 schrieb Johannes Schauer: > > > > Control: severity -1 important

Bug#952615: hinge: FTBFS: fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory

2020-03-19 Thread Gilles Filippini
s/draft_assembly.dir/draft.cpp.o] Error 1 Patch proposal attached. Thanks, _g. diff -Nru hinge-0.5.0/debian/changelog hinge-0.5.0/debian/changelog --- hinge-0.5.0/debian/changelog2019-12-06 16:12:32.0 +0100 +++ hinge-0.5.0/debian/changelog2020-03-19 17:07:48.0 +010

Bug#953021: libhdf5-mpi-dev: provide links to default mpi (hdf5-mpi.pc)

2020-03-18 Thread Gilles Filippini
Drew Parsons a écrit le 18/03/2020 à 11:32 : > On 2020-03-18 17:42, Gilles Filippini wrote: >> Gilles Filippini a écrit le 17/03/2020 à 17:59 : >>> >>> As I understand it now, this is do-able if and only if there is a way to >>> add a slave to an existing alte

Bug#953021: libhdf5-mpi-dev: provide links to default mpi (hdf5-mpi.pc)

2020-03-18 Thread Gilles Filippini
Gilles Filippini a écrit le 17/03/2020 à 17:59 : > Gilles Filippini a écrit le 16/03/2020 à 17:56 : >> Hi Drew, >> >> Drew Parsons a écrit le 03/03/2020 à 19:43 : >>> Thinking about it, if possible it would be best to have hdf5-mpi.pc >>> managed by up

Bug#953021: libhdf5-mpi-dev: provide links to default mpi (hdf5-mpi.pc)

2020-03-17 Thread Gilles Filippini
Gilles Filippini a écrit le 16/03/2020 à 17:56 : > Hi Drew, > > Drew Parsons a écrit le 03/03/2020 à 19:43 : >> Thinking about it, if possible it would be best to have hdf5-mpi.pc >> managed by update-alternatives, but tracking the mpi alternative. >> >> i

Bug#953021: libhdf5-mpi-dev: provide links to default mpi (hdf5-mpi.pc)

2020-03-16 Thread Gilles Filippini
Hi Drew, Drew Parsons a écrit le 03/03/2020 à 19:43 : > Thinking about it, if possible it would be best to have hdf5-mpi.pc > managed by update-alternatives, but tracking the mpi alternative. > > i.e. set up as a slave alternative depending on mpi, that updates if the > local system switches mpi

Bug#951276: default webinterface non-functional

2020-02-27 Thread Gilles Filippini
Balint Reczey a écrit le 27/02/2020 à 19:24 : >>> I took a look and the situation did improve license-wise, but Kodi ships >>> addons/webinterface.default/js/kodi-webinterface.js which is a >>> minimized version of >>> https://github.com/xbmc/chorus2 . It needs to be packages separately, >>> see,

Bug#951276: default webinterface non-functional

2020-02-27 Thread Gilles Filippini
Hi, Bálint Réczey a écrit le 26/02/2020 à 18:24 : > Control: tags -1 help > Control: block -1 by 851663 > > Hi Gilles, > > Bálint Réczey ezt írta (időpont: 2020. febr. > 25., K, 23:32): >> >> Hi, >> >> Gilles Filippini ezt írta (időpo

Bug#951276: default webinterface non-functional

2020-02-25 Thread Gilles Filippini
Hi, On Thu, 13 Feb 2020 17:48:57 +0100 Roderich Schupp wrote: > Package: kodi-data > Version: 2:18.5+dfsg1-1~exp0 > Severity: normal > > The default webinterface shows just a header bar, > see attached screenshot. > > The webinterface.default included in the Debian package is > seriously

Bug#951856: jython-stilts: Wrong permissions on /usr/share/jython/Lib/site-packages/stilts$py.class

2020-02-22 Thread Gilles Filippini
Package: jython-stilts Version: 3.2-1 Severity: serious -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, The postinstall script of jython-stilts installs this file with wrong permissions: - -rw--- 1 root root 508811 Feb 22 12:16 '/usr/share/jython/Lib/site-packages/stilts$py.class'

Bug#949950: ITP: libh5cpp-dev -- H5CPP is a novel approach to persistence in the field of machine learning and science, it provides high performance sequential and block access to HDF5 containers thro

2020-01-27 Thread Gilles Filippini
Control: retitle -1 ITP: libh5cpp -- c++ header only library for HDF5 dataformat ste...@vargaconsulting.ca a écrit le 27/01/2020 à 16:03 : > Package: wnpp > Severity: wishlist > Owner: ste...@vargaconsulting.ca > > * Package name: libh5cpp-dev The source package name is: libh5cpp. >

Bug#949951: ITP: h5cpp-compiler -- This LLVM/clang based C++ source code transformation tool automates the otherwise time consuming, error prone process of generating type descriptors for HDF5 Compoun

2020-01-27 Thread Gilles Filippini
Control: retitle -1 ITP: h5cpp-compiler -- compiler to generate HDF5 compound type descriptor from POD types ste...@vargaconsulting.ca a écrit le 27/01/2020 à 16:11 : > Package: wnpp > Severity: wishlist > Owner: ste...@vargaconsulting.ca > > * Package name: h5cpp-compiler > Version

Bug#949869: libpbdata-dev: Missing Depends: libpbcopper-dev

2020-01-26 Thread Gilles Filippini
Package: libpbdata-dev Version: 5.3.3+dfsg-2 Severity: serious Justification: Causes FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, A tentative rebuild of pbdagcon failed with: FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-WqBR9Y/pbdagcon-0.3+git20161121.000+ds/DAZZ_DB

Bug#949544: src:deal.ii: FTBFS with tbb 2020.0-2

2020-01-21 Thread Gilles Filippini
Package: src:deal.ii Version: 9.1.1-8 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, deal.II FTBFS when built against tbb 2020.0-2: - -- Found TBB_LIBRARY - -- TBB_DEBUG_LIBRARY not found! Call: - -- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug

Bug#949543: src:blasr: FTBFS with pbseqlib 5.3.3+dfsg-1

2020-01-21 Thread Gilles Filippini
Package: src:blasr Version: 5.3.3+dfsg-3 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, Blasr 5.3.3+dfsg-3 FTBFS when built against pbseqlib 5.3.3+dfsg-1: meson.build:64:0: ERROR: C++ library 'pbdata' not found

Bug#949542: src:pbdagcon: FTBFS with pbseqlib 5.3.3+dfsg-1

2020-01-21 Thread Gilles Filippini
Package: src:pbdagcon Version: 0.3+git20161121.000+ds-1.1 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Hi, Pbdagcon FTBFS when built against pbseqlib 5.3.3+dfsg-1: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat

Bug#948772: [med-fichier] provide mpi and serial package

2020-01-13 Thread Gilles Filippini
Hi, Christophe Trophime a écrit le 13/01/2020 à 08:58 : > Package: med-fichier > Version: 4.4.1+ds1-2 > Severity: normal > > As latest gmsh package is compiled without mpi support med format is no > longer supported > in gmsh. It's a kind of regression somehow. Well, the regression comes from

Bug#947280: src:paraview: FTBFS on armel an mipsel: undefined reference to `__atomic_fetch_add_8'

2019-12-23 Thread Gilles Filippini
@@ +paraview (5.7.0-3.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * New patch libatomic.patch: tentative fix for FTBFS on armel and mipsel + + -- Gilles Filippini Mon, 23 Dec 2019 22:33:43 +0100 + paraview (5.7.0-3) unstable; urgency=medium * Hard-code Build-Dep

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